Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 756 a.a., RNA-binding transcriptional accessory protein from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  793 bits (2049), Expect = 0.0
 Identities = 406/708 (57%), Positives = 529/708 (74%), Gaps = 4/708 (0%)

Query: 13  RLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERLRTLDK 72
           ++A++L IT  Q  A  +L DEG T+PF++RYRKEATG LDEV +  +RD  E+LR LDK
Sbjct: 10  KIASELSITIKQVEATARLLDEGATVPFISRYRKEATGSLDEVQIAGVRDRLEQLRELDK 69

Query: 73  RRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGLAPLAE 132
           RR++I+ S+ ++E+LTP+L   + AA T+ ALEDIYLP++PKR TRA  ARE+GL PLAE
Sbjct: 70  RRESILKSIRDQEKLTPELEAQIMAAETMAALEDIYLPYKPKRRTRATIAREKGLEPLAE 129

Query: 133 RLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDIFVRRA 192
           RL +Q        A+ F+ E K V D   AL+GARDI+AE ++E+   RA +R IF ++ 
Sbjct: 130 RLFQQESFDVEAEASNFISEEKEVKDVNEALSGARDIMAEWMNENAEARAAIRQIFEKQG 189

Query: 193 TLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVRPDDDIAVG 252
             +S+V  GKEE+   ++D+F+  E    AP+HR+LAM RGE E +L +  +PD++ A+ 
Sbjct: 190 VFKSRVMMGKEEEGQKFKDYFEWEEPIEKAPSHRILAMRRGETEMVLMLTAQPDEEAALA 249

Query: 253 ALHRRWLKGRASSAGTDAAEVATALTDAWNRLLAPSLENEFRTALRERAEAEAIAVFAAN 312
            L   +++G  S+A ++  +V  A  D + RLL  S+E E R + ++RA+ EAI VFA N
Sbjct: 250 KLEDMFVQG--SNAASE--QVRLAARDCYKRLLKLSMETEVRLSSKKRADEEAIRVFADN 305

Query: 313 LRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVIHPLTGGDRATRAAATLR 372
           LR+LLL+ P+G +  LALDPG+RTG KLV LD QG LLH+E I+P TG  +A  AA  ++
Sbjct: 306 LRQLLLSSPLGQKTVLALDPGFRTGCKLVVLDKQGKLLHNETIYPHTGQGKAMEAAQNVK 365

Query: 373 ELCTRHGIEAVAVGNGTAGRETEAFVKSAGLPPHVTVALVDERGASVYSASEVARAEFPD 432
            L  R  +EA+A+GNGTA RETEAFVK   LP  V V +V+E GAS+YSASEVAR EFPD
Sbjct: 366 YLVDRFEVEALAIGNGTASRETEAFVKGLNLPKTVQVVMVNESGASIYSASEVAREEFPD 425

Query: 433 HDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVDQNALRRALEEVVASCVNAVG 492
            DVTVRGA+SIGRRLMDPLAELVK+DP+S+GVGQYQHDVDQ+AL+ +L++VV SCVNAVG
Sbjct: 426 QDVTVRGAVSIGRRLMDPLAELVKIDPKSIGVGQYQHDVDQSALKHSLDDVVMSCVNAVG 485

Query: 493 VDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRDLLKVPRLGPKAFEQAAGFLR 552
           V+VNTAS +LL YVSG+GPALA+ IV  R  NGPF+TR +L KV RLG KAFEQAAGFLR
Sbjct: 486 VEVNTASKQLLTYVSGLGPALAQNIVEYRNQNGPFKTRTELKKVARLGDKAFEQAAGFLR 545

Query: 553 VHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDATRREALRLERYVDDRVGLPTL 612
           +     PLDASAVHPESY +V +MA+D G +V DL++    R+ + L+ YV D VGLPTL
Sbjct: 546 IRDAKNPLDASAVHPESYPIVEQMAKDLGVTVQDLIKSDELRKKINLKNYVTDTVGLPTL 605

Query: 613 RDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRD 672
           +DI+SELA+PGRDPR  FE F+F EGVN++ D++ GM+LPGIVTN+T FGAFVDIGVH+D
Sbjct: 606 QDIISELAKPGRDPRETFEAFSFTEGVNEIKDLRAGMKLPGIVTNITAFGAFVDIGVHQD 665

Query: 673 GLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTLKGVP 720
           GLVHVS L+DRFV +P EVV  G+KV V VL+VD  R+RI+L++KG P
Sbjct: 666 GLVHVSHLSDRFVSNPHEVVKVGQKVEVTVLEVDEARKRISLSMKGDP 713