Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 822 a.a., Transcription accessory protein (S1 RNA-binding domain) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  578 bits (1489), Expect = e-169
 Identities = 336/743 (45%), Positives = 453/743 (60%), Gaps = 40/743 (5%)

Query: 10  VAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERLRT 69
           +  ++A ++ +   Q  AA++L D G T+PF+ARYRKE TGGLD++ L  L    + LR 
Sbjct: 37  IIRQIATEIRVEERQVQAAVELLDGGATVPFIARYRKEVTGGLDDIQLRELSYRLDYLRE 96

Query: 70  LDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGLAP 129
           L+ RR A++ S+ E+ +LT  L  A+ A  T   LED+YLPF+ KR T+   ARE G+ P
Sbjct: 97  LEDRRAAVLKSIDEQGKLTDALRAAIAAVPTKQELEDLYLPFKQKRRTKGQIAREFGIEP 156

Query: 130 LAERLLEQRGAQAGQLAAPF------VDEAKGVPDTA---AALAGARDIIAETVSEDRAT 180
           LA++L           AA F      +D+ K   D +   A L G RDI++E  +ED + 
Sbjct: 157 LADKLFADPTLDPSTEAAAFTRPPEVLDDGKPGADFSTVPAVLDGVRDILSERWAEDPSL 216

Query: 181 RATLRDIFVRRATLRSKVARGKEEQA---ATYRDHFDRSEHAAAAPAHRLLAMFRGEREE 237
              LR+       L+S +  GK+E A   A +RD+F+  E  A  P+HR LA+FRG   E
Sbjct: 217 VQNLREWLWSEGLLKSTLVNGKDENAPEVAKFRDYFEYDEPIARVPSHRALAVFRGRGLE 276

Query: 238 LLDVRV---RPDDDIAVG-------------ALHRRWLKGRASSAGTDAAEVATALTDAW 281
           +LD ++    P D +  G             ALH  W     + A  D      A T  W
Sbjct: 277 ILDAKLVLPEPPDAVPAGKPGATPSLAEGRIALHLGW--SHKARAADDLLRKCMAWT--W 332

Query: 282 NRLLAPSLENEFRTALRERAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLV 341
              L+ S E +    LRE AEA AI VFA NLR+LLLA P GP+  + LDPG RTG K+ 
Sbjct: 333 RVKLSLSSERDLFARLRESAEAVAIKVFADNLRDLLLAAPAGPKVVMGLDPGIRTGVKVA 392

Query: 342 CLDAQGALLHHEVIHPLTGGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAF---- 397
            +DA G L+    ++P         A  TL  L  +HG+  +A+GNGTA RET+      
Sbjct: 393 VVDATGKLVDTATVYPHEPRRDWDGALHTLALLGRKHGVNLIAIGNGTASRETDKLAADL 452

Query: 398 ---VKSAGLPPHVTVALVDERGASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAEL 454
              ++ A L   V   +V E GASVYSASE A  E PD DV++RGA SI RRL DPLAEL
Sbjct: 453 IKLLEKANLTG-VQKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAEL 511

Query: 455 VKVDPRSLGVGQYQHDVDQNALRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALA 514
           VK+DP+S+GVGQYQHDV+Q+ L R LE VV  CVN VGVD+NTAS  LL+ VSG+  ++A
Sbjct: 512 VKIDPKSIGVGQYQHDVNQSELARTLEAVVEDCVNGVGVDLNTASVPLLSRVSGLSGSVA 571

Query: 515 KGIVALRAVNGPFRTRRDLLKVPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVR 574
           K +V  R  NG F++R+ L+ V  LG K FEQ+AGFLR+ GG  PLD + VHPE+YAVV 
Sbjct: 572 KAVVRWRETNGAFKSRQQLMDVAGLGAKTFEQSAGFLRIRGGDNPLDMTGVHPETYAVVE 631

Query: 575 RMAEDTGCSVPDLMRDATRREALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFA 634
           ++ E TG  V +LM  A   + LR E + ++R G+ T++DI+ EL +PGRDPRP F+V  
Sbjct: 632 QIMEKTGKPVAELMGRADMLKTLRPELFANERFGVITVKDILGELEKPGRDPRPDFQVAR 691

Query: 635 FAEGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAP 694
           F EGV+ + D++ GM L G V+NV +FGAFVD+GVH+DGLVHVSQL+ +FV D  E+V  
Sbjct: 692 FNEGVDDISDLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREIVKT 751

Query: 695 GRKVRVRVLDVDRQRERINLTLK 717
           G  V+V+V++VD  R+RI L++K
Sbjct: 752 GDIVKVKVMEVDVARKRIGLSMK 774