Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 777 a.a., RNA-binding transcriptional accessory protein from Pectobacterium carotovorum WPP14

 Score =  628 bits (1619), Expect = 0.0
 Identities = 348/726 (47%), Positives = 464/726 (63%), Gaps = 23/726 (3%)

Query: 7   HDSVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCER 66
           +DS++H +A++L   T Q  AA++L DEG T+PF+ARYRKE TGGLD+  L  L      
Sbjct: 2   NDSLSHIIASELQARTEQVDAAVRLLDEGNTVPFIARYRKEVTGGLDDTQLRQLETRLGY 61

Query: 67  LRTLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERG 126
           LR L+ RR  I+ S+ ++ +LT  LA A+    + T LED+YLP++PKR TR   A E G
Sbjct: 62  LRELEDRRQTILKSIDDQGKLTAQLATAIKGTLSKTELEDLYLPYKPKRRTRGQIAIEAG 121

Query: 127 LAPLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRD 186
           L PLA+ L +    +    A  +VD  KGV D  AAL GAR I+ E  +ED    A +R+
Sbjct: 122 LEPLADSLWQDPSQEPELTAQAYVDAEKGVADVKAALDGARYILMERFAEDATLLAKVRN 181

Query: 187 IFVRRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVRPD 246
              + A L S+V  GKEE+ A +RD+FD  E  A  P+HR LAMFRG  E +L + +  D
Sbjct: 182 YLWKNAHLVSRVVEGKEEEGAKFRDYFDHHEPIAQVPSHRALAMFRGRNEGVLQLALNAD 241

Query: 247 ------------DDIAVGALHRRWLKGRASSAGTDAAEVATALTDAWNRLLAPSLENEFR 294
                       + I +  L+ R       +A  D+   A  ++  W   +   LE E  
Sbjct: 242 PQHEEAPRESYCEQIIIDHLNLR-----LGNAAADSWRRAV-ISWTWRIKVLLHLETELM 295

Query: 295 TALRERAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEV 354
            ++RE+AE EAI VFA N+ +LL+A P G R T+ LDPG RTG K+  +DA G L+  + 
Sbjct: 296 GSVREKAEDEAINVFARNMHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKLVATDT 355

Query: 355 IHPLTGGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAFVKSAGLP-PHVTV--AL 411
           I+P TG  +A ++A  +  LC ++ +E VA+GNGTA RETE F        P +     +
Sbjct: 356 IYPHTG--QAAKSAPIIAALCLKYQVELVAIGNGTASRETERFFLDTQKQFPDIKAQKVI 413

Query: 412 VDERGASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDV 471
           V E GASVYSASE+A  EFPD DV++RGA+SI RRL DPLAELVK+DP+S+GVGQYQHDV
Sbjct: 414 VSEAGASVYSASELAALEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDV 473

Query: 472 DQNALRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRR 531
            Q+ L + L+ VV  CVNAVGVD+NTAS  LL  V+G+   +A+ IV  R  NG F  R 
Sbjct: 474 SQSLLAKKLDAVVEDCVNAVGVDLNTASVALLTRVAGLTRMMAQNIVTWRDENGRFHNRE 533

Query: 532 DLLKVPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDA 591
            LLKV RLGPKAFEQ AGFLR++ G  PLDAS VHPE+Y +V R+   T  ++ +LM + 
Sbjct: 534 QLLKVSRLGPKAFEQCAGFLRINHGNNPLDASTVHPEAYPIVERILAATEQALQELMGNP 593

Query: 592 TRREALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMEL 651
                L+   + D+R G+PT+ DI+ EL +PGRDPRP F+  +FA+GV  ++D+ PGM L
Sbjct: 594 NALRNLKPSDFTDERFGVPTVTDIIKELEKPGRDPRPEFKTASFADGVETLNDLLPGMIL 653

Query: 652 PGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRER 711
            G VTNVT FGAFVDIGVH+DGLVH+S LAD FV DP +VV  G  V+V+V++VD QR+R
Sbjct: 654 EGAVTNVTNFGAFVDIGVHQDGLVHISSLADHFVDDPHKVVKAGDIVKVKVMEVDLQRKR 713

Query: 712 INLTLK 717
           I LT++
Sbjct: 714 IALTMR 719