Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 787 a.a., RNA-binding transcriptional accessory protein from Magnetospirillum magneticum AMB-1

 Score =  641 bits (1654), Expect = 0.0
 Identities = 362/730 (49%), Positives = 472/730 (64%), Gaps = 28/730 (3%)

Query: 9   SVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERLR 68
           ++ +R+A +LG+  +Q +A +++ DEG T+PF+ARYRKEAT GLD+  L  L +    LR
Sbjct: 12  AITNRIALELGVKPSQVAATVQMLDEGATVPFIARYRKEATDGLDDTQLRNLEERLGYLR 71

Query: 69  TLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGLA 128
            L+ RR AI+ S+ E+ +LTPDLA  +  A +   LED+YLP++PKR T+A  ARE GL 
Sbjct: 72  ELEDRRAAILRSIEEQGKLTPDLAGQIGEADSKARLEDLYLPYKPKRRTKAQIAREAGLE 131

Query: 129 PLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDIF 188
           PLA+ LL        Q A P+VD  KGV D  AAL GAR I+ E  +ED      LRD  
Sbjct: 132 PLADALLADPALVPEQAAEPYVDAEKGVADVKAALDGARQILMERFAEDAELLGNLRDAL 191

Query: 189 VRRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRV----- 243
                L S VA GK E  A + D+FD  E   A P+HR LA+FRG  E +L++++     
Sbjct: 192 WDGGVLISTVAEGKSEAGAKFSDYFDYREAIKAIPSHRALALFRGRNENVLNLKLLTPDE 251

Query: 244 --RPDDDIAVGA------LHRRW----LKGRASSAGTDAAEVATALTDAWNRLLAPSLEN 291
             RPD  ++ G       + RR+    LK  A S       +A  +  AW   +   LE 
Sbjct: 252 AARPDGTVSQGPGEFEARIARRFSVRDLKRPADSW------LAETVRWAWRIKIHLHLEL 305

Query: 292 EFRTALRERAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLH 351
           E  + LRE AEAEAI VFA NLR LLL  P G R  + LDPG RTG K+   DA G ++ 
Sbjct: 306 ELMSRLREAAEAEAINVFARNLRALLLQAPAGARNCIGLDPGIRTGVKVAVTDATGKVVE 365

Query: 352 HEVIHPLTGGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAFVKSAGLPPHVTVAL 411
              I+P    +    + A +  L  +HGI+ VA+GNGTA RET+  V    +  H  + L
Sbjct: 366 TATIYPHQPRNDWQGSVAAIAHLARKHGIKLVAIGNGTASRETDRLVIDV-MKRHPDLGL 424

Query: 412 ----VDERGASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQY 467
               V E GASVYSASE+A  EFPD DV++RGA+SI RRL DPLAELVK+DP+++GVGQY
Sbjct: 425 EKLVVSEAGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQY 484

Query: 468 QHDVDQNALRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPF 527
           QHDVDQ  L R+L+ VV  CVNAVGV+VNTAS  LLA V+G+ P +A+ +V  R   GPF
Sbjct: 485 QHDVDQVKLGRSLDAVVEDCVNAVGVEVNTASAPLLARVAGLSPTVARNVVEFRDRFGPF 544

Query: 528 RTRRDLLKVPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDL 587
            +R  L +V RLG KAFEQAAGFLRV GG  PLD+SAVHPE+Y VV R+ + TG  V  L
Sbjct: 545 ASREALKQVERLGAKAFEQAAGFLRVVGGVNPLDSSAVHPEAYPVVERIVKATGRPVKAL 604

Query: 588 MRDATRREALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQP 647
           + D++   +L  + + D+R G PT++DI+ EL +PGRDPRP F+  AF EGV  ++D++P
Sbjct: 605 IGDSSFIRSLDPKEFTDERFGEPTVKDILKELEKPGRDPRPEFKTAAFKEGVETLNDLKP 664

Query: 648 GMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDR 707
           GM L G+VTNVT FGAFVDIGVH+DGLVH+S LADRFV+DP EVV PG  V+V+VL+VD 
Sbjct: 665 GMILEGVVTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVKVLEVDI 724

Query: 708 QRERINLTLK 717
           +R RI L+++
Sbjct: 725 KRSRIALSMR 734