Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 557 a.a., SSU ribosomal protein S1p from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 73.6 bits (179), Expect = 3e-17
 Identities = 37/82 (45%), Positives = 59/82 (71%), Gaps = 1/82 (1%)

Query: 636 AEGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPG 695
           AE    ++++Q GME+ GIV N+T +GAFVD+G   DGL+H++ +A + V+ P+E+V  G
Sbjct: 180 AERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVG 238

Query: 696 RKVRVRVLDVDRQRERINLTLK 717
            ++ V+VL  DR+R R++L LK
Sbjct: 239 DEINVKVLKFDRERTRVSLGLK 260



 Score = 56.6 bits (135), Expect = 3e-12
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 648 GMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQL--ADRFVRDPAEVVAPGRKVRVRVLDV 705
           G +L G VTN+T +G FV+I    +GLVHVS++   ++ +  P++VV  G  V V VLD+
Sbjct: 277 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKVVNVGDVVEVMVLDI 335

Query: 706 DRQRERINLTLK 717
           D +R RI+L LK
Sbjct: 336 DEERRRISLGLK 347



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 635 FAEGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPA-EVVA 693
           FAE  NK D V+      G + ++T FG F+ +    DGLVH+S ++     + A     
Sbjct: 357 FAETHNKGDRVE------GKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYK 410

Query: 694 PGRKVRVRVLDVDRQRERINLTLK 717
            G ++   VL VD +RERI+L +K
Sbjct: 411 KGDEIAAVVLQVDAERERISLGVK 434