Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 773 a.a., Transcriptional accessory protein from Kangiella aquimarina DSM 16071

 Score =  586 bits (1510), Expect = e-171
 Identities = 325/728 (44%), Positives = 451/728 (61%), Gaps = 19/728 (2%)

Query: 10  VAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERLRT 69
           +  ++A +L +   Q  AA++L DEG T+PF+ARYRKE TG LD+  L  L      LR 
Sbjct: 4   INQQIAQELNVRPQQVEAAVRLLDEGSTVPFIARYRKEVTGALDDTQLRDLEQRLGYLRE 63

Query: 70  LDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGLAP 129
           L+ RR AI+ S+ E+E+LTP+L  ++ AATT + LED+YLP++PKR T+A  ARE GL P
Sbjct: 64  LEDRRAAILKSIEEQEKLTPELKSSIEAATTKSELEDLYLPYKPKRRTKAQIAREAGLEP 123

Query: 130 LAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDIFV 189
           LA  L +         A  +++    +  T  AL GAR I+ E  +E+     TLR+   
Sbjct: 124 LAMDLWQNPTLDPEAEAEKYLNPEHKIETTKDALDGARQILMEVFAENADLLKTLREYLW 183

Query: 190 RRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVRPDDDI 249
             A + SKV  GKE++   + D+FD SE     P+HR+LA+ RG  E +L +++  + D+
Sbjct: 184 DNAYIHSKVIEGKEKEGIKFSDYFDHSEAFKTIPSHRILALLRGRNENILTLQMVSNQDL 243

Query: 250 -----------AVGALHRRWLKGRASSAGTDAAEVATALTDAWNRLLAPSLENEFRTALR 298
                      ++ A H   +K +  +A     +V       W   L   LE E    +R
Sbjct: 244 IKDPEASDPCLSMVADHFN-IKDQKRAADYWLQQVVLW---TWKIKLHLYLETELLAKVR 299

Query: 299 ERAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVIHPL 358
           E  E EAI +FA NL +LL+A P G +  + LDPG RTG K V +D  G LL    I P 
Sbjct: 300 ELGETEAIRIFARNLNDLLMAAPAGAKTNMGLDPGLRTGTKAVIVDETGKLLTQTTIFPH 359

Query: 359 TGGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAFVKSA-GLPPHVTVA--LVDER 415
              ++  ++   L+ LC  H +E V++GNGTA RET+  V     + P + +   +V E 
Sbjct: 360 APQNQWDQSLRKLQTLCEMHKVELVSIGNGTASRETDKLVAELMKMAPQLKLQKIMVSEA 419

Query: 416 GASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVDQNA 475
           GASVYSAS +A  EFPD DV+ RGA+SI RRL DPLAELVK++P+S+GVGQYQHDV Q+ 
Sbjct: 420 GASVYSASALAAQEFPDLDVSYRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQ 479

Query: 476 LRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRDLLK 535
           L ++L+ VV  CVNAVGVD+N AS  LL  VSG+   +A+ IV  R  NG F  R+ LL+
Sbjct: 480 LAKSLDGVVEDCVNAVGVDLNMASVPLLTRVSGLSKTIAQNIVNWRDTNGRFNNRKQLLE 539

Query: 536 VPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGC-SVPDLMRDATRR 594
           V R+GPK +EQAAGFLR+  G   LD+SAVHPE+Y VV +M +      V  LM +  + 
Sbjct: 540 VERMGPKTYEQAAGFLRIRDGDNALDSSAVHPEAYPVVEKMMQSLELQDVHQLMGNTDKL 599

Query: 595 EALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGI 654
             ++ + + D+  GL T+ DI+ EL +PGRDPRP F++  F EGV  ++D++ GMEL G+
Sbjct: 600 RQIKAQEFTDETFGLHTVNDILKELDKPGRDPRPEFKMVRFKEGVETLNDLKIGMELEGV 659

Query: 655 VTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINL 714
           VTNVT FGAF+D+GVH+DGLVH+S +A+ F++DPAEVV  G  V+V VLDVD QR+RI+L
Sbjct: 660 VTNVTAFGAFIDVGVHQDGLVHLSMMANEFIKDPAEVVKAGDIVKVWVLDVDMQRKRISL 719

Query: 715 TLKGVPQQ 722
           ++ G   Q
Sbjct: 720 SMIGPDSQ 727