Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 778 a.a., RNA-binding transcriptional accessory protein from Dickeya dianthicola ME23

 Score =  630 bits (1625), Expect = 0.0
 Identities = 351/723 (48%), Positives = 460/723 (63%), Gaps = 19/723 (2%)

Query: 8   DSVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERL 67
           ++++  +A++L   T Q +AA++L DEG T+PF+ARYRKE TGGLD+  L  L      L
Sbjct: 3   NALSQIIASELQARTEQVTAAIQLLDEGNTVPFIARYRKEVTGGLDDTQLRQLESRLSYL 62

Query: 68  RTLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGL 127
           R L++RR  I+ S+ E+ +LT  LA +++   + T LED+YLP++PKR TR   A E GL
Sbjct: 63  RELEERRQTILKSIEEQGKLTDALATSINTTLSKTELEDLYLPYKPKRRTRGQIAIEAGL 122

Query: 128 APLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDI 187
            PLA+ L          +A  +V+   GV D  AAL GAR I+ E  +ED A  A +RD 
Sbjct: 123 EPLADSLWNDPSQTPELVANAYVNADNGVADVKAALDGARYILMERFAEDAALLAKVRDY 182

Query: 188 FVRRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVRPDD 247
             + A L S+V  GKEE  A +RD+FD  E  +  P+HR LAMFRG  E +L + +  D 
Sbjct: 183 LWKNAHLVSRVVEGKEEDGAKFRDYFDHREPLSQVPSHRALAMFRGRNEGMLQLSLNADP 242

Query: 248 DI----------AVGALHRRWLKGRASSAGTDAAEVATALTDAWNRLLAPSLENEFRTAL 297
                        +   H R   G A + G   A V       W   +   LE E   ++
Sbjct: 243 QFDEPPKESHCEQIIVDHLRLRLGNAPADGWRRAVVNWT----WRIKVLLHLETELMGSV 298

Query: 298 RERAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVIHP 357
           RE+AE EAI VFA NL +LL+A P G R T+ LDPG RTG K+  +DA G L+  + I+P
Sbjct: 299 REKAEDEAINVFARNLHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKLVATDTIYP 358

Query: 358 LTGGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAFVKSAGLP-PHVTV--ALVDE 414
            TG  +A +AA  +  LC +H +E VA+GNGTA RETE F        P V     +V E
Sbjct: 359 HTG--QAAKAATVVAALCIKHQVELVAIGNGTASRETERFFLDTQKQFPDVKAQKVIVSE 416

Query: 415 RGASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVDQN 474
            GASVYSASE+A  EFP  DV++RGA+SI RRL DPL+ELVK+DP+S+GVGQYQHDV Q 
Sbjct: 417 AGASVYSASELAALEFPGLDVSLRGAVSIARRLQDPLSELVKIDPKSIGVGQYQHDVSQT 476

Query: 475 ALRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRDLL 534
            L + L+ +V  CVNAVGVD+NTAS  LL  V+G+   +A+ IV+ R  NG F  R  LL
Sbjct: 477 QLAKKLDAIVEDCVNAVGVDLNTASVPLLTRVAGLTRLMAQNIVSWRDENGRFNNRDQLL 536

Query: 535 KVPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDATRR 594
           KV RLGPKAFEQ AGFLR++ G  PLDAS VHPE+Y VV R+   T   + DLM +++  
Sbjct: 537 KVSRLGPKAFEQCAGFLRINHGDNPLDASTVHPETYPVVERILAATEQKLQDLMGNSSAL 596

Query: 595 EALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGI 654
             L+   + DDR G+PT+ DI+ EL +PGRDPRP F+  +FA+GV  ++D+ PGM L G 
Sbjct: 597 RTLKPASFTDDRFGVPTVTDIIKELEKPGRDPRPEFKTASFADGVETLNDLLPGMILEGA 656

Query: 655 VTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINL 714
           VTNVT FGAFVDIGVH+DGLVH+S LADRFV DP +VV  G  V+V+VL+VD QR+RI L
Sbjct: 657 VTNVTNFGAFVDIGVHQDGLVHISSLADRFVEDPHQVVKAGDIVKVKVLEVDLQRKRIAL 716

Query: 715 TLK 717
           T++
Sbjct: 717 TMR 719