Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 781 a.a., RNA-binding transcriptional accessory protein from Dickeya dadantii 3937

 Score =  626 bits (1615), Expect = 0.0
 Identities = 351/725 (48%), Positives = 461/725 (63%), Gaps = 23/725 (3%)

Query: 8   DSVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCERL 67
           ++++  +A++L     Q SAA++L DEG T+PF+ARYRKE TGGLD+  L  L      L
Sbjct: 3   NALSQIIASELQARNEQVSAAIQLLDEGNTVPFIARYRKEVTGGLDDTQLRQLETRLSYL 62

Query: 68  RTLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERGL 127
           R L++RR  I+ S+ E+ +LT  LA +++   + T LED+YLP++PKR TR   A E GL
Sbjct: 63  RELEERRQTILKSIEEQGKLTDALATSINTTLSKTELEDLYLPYKPKRRTRGQIAIEAGL 122

Query: 128 APLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRDI 187
            PLA+ L          +A  +++   GV D  AAL GAR I+ E  +ED A  A +RD 
Sbjct: 123 EPLADSLWNDPSQTPELVAEAYINADNGVADVKAALDGARYILMERFAEDAALLAKVRDY 182

Query: 188 FVRRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVRPD- 246
             + A L S+V  GKEE  A +RD+FD  E  +  P+HR LAMFRG  E +L + +  D 
Sbjct: 183 LWKNAHLVSRVVEGKEEDGAKFRDYFDHHEPLSQVPSHRALAMFRGRNEGVLQLSLNADP 242

Query: 247 -----------DDIAVGALHRRWLKGRASSAGTDAAEVATALTDAWNRLLAPSLENEFRT 295
                      + I +  L  R   G A + G   A V       W   +   LE E   
Sbjct: 243 QFDEPPKESHCEHIIIEHLGLRL--GNAPADGWRRAVVNWT----WRIKVLLHLETELMG 296

Query: 296 ALRERAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVI 355
           ++RE+AE EAI VFA NL +LL+A P G R T+ LDPG RTG K+  +DA G L+  + I
Sbjct: 297 SVREKAEDEAINVFARNLHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKLVATDTI 356

Query: 356 HPLTGGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAFVKSAGLP-PHVTV--ALV 412
           +P TG  +  +AA  +  LC +H +E VA+GNGTA RETE F        P V     +V
Sbjct: 357 YPHTG--QTAKAATVVAALCIKHQVELVAIGNGTASRETERFFLDTQKQFPDVKAQKVIV 414

Query: 413 DERGASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVD 472
            E GASVYSASE+A  EFPD DV++RGA+SI RRL DPL+ELVK+DP+S+GVGQYQHDV 
Sbjct: 415 SEAGASVYSASELAALEFPDLDVSLRGAVSIARRLQDPLSELVKIDPKSIGVGQYQHDVS 474

Query: 473 QNALRRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRD 532
           Q  L + L+ VV  CVN VGVD+NTAS  LL  V+G+   +A+ IV+ R  NG F  R  
Sbjct: 475 QTQLAKKLDAVVEDCVNGVGVDLNTASVPLLTRVAGLTRLMAQNIVSWRDENGRFNNRDQ 534

Query: 533 LLKVPRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDAT 592
           LLKV RLGPKAFEQ AGFLR++ G  PLDAS VHPE+Y VV R+   T   + DLM +A+
Sbjct: 535 LLKVSRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATEQKLQDLMGNAS 594

Query: 593 RREALRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELP 652
              +L+   + DDR G+PT+ DI+ EL +PGRDPRP F+  +FA+GV  ++D+ PGM L 
Sbjct: 595 ALRSLKPASFTDDRFGVPTVTDIIKELEKPGRDPRPEFKTASFADGVETLNDLLPGMILE 654

Query: 653 GIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERI 712
           G VTNVT FGAFVDIGVH+DGLVH+S L+DRFV DP +VV  G  V+V+VL+VD QR+RI
Sbjct: 655 GAVTNVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVLEVDLQRKRI 714

Query: 713 NLTLK 717
            LT++
Sbjct: 715 ALTMR 719