Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 773 a.a., putative transcriptional accessory protein from Escherichia coli BL21

 Score =  649 bits (1673), Expect = 0.0
 Identities = 361/721 (50%), Positives = 469/721 (65%), Gaps = 13/721 (1%)

Query: 7   HDSVAHRLAADLGITTAQASAALKLFDEGGTIPFVARYRKEATGGLDEVALTALRDGCER 66
           +DS    +A ++     Q  AA++L DEG T+PF+ARYRKE TGGLD+  L  L      
Sbjct: 3   NDSFCRIIAGEIQARPEQVDAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRLSY 62

Query: 67  LRTLDKRRDAIIASMTEREQLTPDLAKALHAATTLTALEDIYLPFRPKRVTRAAKARERG 126
           LR L++RR AI+ S++E+ +LT DLAKA++A  + T LED+YLP++PKR TR   A E G
Sbjct: 63  LRELEERRQAILKSISEQGKLTDDLAKAINATLSKTELEDLYLPYKPKRRTRGQIAIEAG 122

Query: 127 LAPLAERLLEQRGAQAGQLAAPFVDEAKGVPDTAAALAGARDIIAETVSEDRATRATLRD 186
           L PLA+ L           AA +VD  KGV DT AAL GAR I+ E  +ED A  A +RD
Sbjct: 123 LEPLADLLWSDPSHTPEVAAAQYVDADKGVADTKAALDGARYILMERFAEDAALLAKVRD 182

Query: 187 IFVRRATLRSKVARGKEEQAATYRDHFDRSEHAAAAPAHRLLAMFRGEREELLDVRVR-- 244
              + A L S V  GKEE+ A +RD+FD  E  +  P+HR LAMFRG  E +L + +   
Sbjct: 183 YLWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTVPSHRALAMFRGRNEGVLQLSLNAD 242

Query: 245 -----PDDDIAVGALHRRWLKGRASSAGTDAAEVATALTDAWNRLLAPSLENEFRTALRE 299
                P  +     +    L  R ++A  D+      ++  W   +   LE E    +RE
Sbjct: 243 PQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGV-VSWTWRIKVLMHLETELMGTVRE 301

Query: 300 RAEAEAIAVFAANLRELLLAPPMGPRRTLALDPGWRTGAKLVCLDAQGALLHHEVIHPLT 359
           RAE EAI VFA NL +LL+A P G R T+ LDPG RTG K+  +DA G L+  + I+P T
Sbjct: 302 RAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHT 361

Query: 360 GGDRATRAAATLRELCTRHGIEAVAVGNGTAGRETEAFVKSAGLP-PHVTV--ALVDERG 416
           G  +A +AA T+  LC +H +E VA+GNGTA RETE F        P VT    +V E G
Sbjct: 362 G--QAAKAAMTVAALCEKHNVELVAIGNGTASRETERFYLDVQKQFPKVTAQKVIVSEAG 419

Query: 417 ASVYSASEVARAEFPDHDVTVRGAISIGRRLMDPLAELVKVDPRSLGVGQYQHDVDQNAL 476
           ASVYSASE+A  EFPD DV++RGA+SI RRL DPLAELVK+DP+S+GVGQYQHDV Q  L
Sbjct: 420 ASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQL 479

Query: 477 RRALEEVVASCVNAVGVDVNTASPELLAYVSGIGPALAKGIVALRAVNGPFRTRRDLLKV 536
            R L+ VV  CVNAVGVD+NTAS  LL  V+G+   +A+ IVA R  NG F+ R+ LLKV
Sbjct: 480 ARKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKV 539

Query: 537 PRLGPKAFEQAAGFLRVHGGPEPLDASAVHPESYAVVRRMAEDTGCSVPDLMRDATRREA 596
            RLGPKAFEQ AGFLR++ G  PLDAS VHPE+Y VV R+   T  ++ DLM +++    
Sbjct: 540 SRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSSELRN 599

Query: 597 LRLERYVDDRVGLPTLRDIMSELARPGRDPRPAFEVFAFAEGVNKVDDVQPGMELPGIVT 656
           L+   + D++ G+PT+ DI+ EL +PGRDPRP F+   FA+GV  ++D+QPGM L G VT
Sbjct: 600 LKASDFTDEKFGVPTVTDIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVT 659

Query: 657 NVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPGRKVRVRVLDVDRQRERINLTL 716
           NVT FGAFVDIGVH+DGLVH+S L+++FV DP  VV  G  V+V+VL+VD QR+RI LT+
Sbjct: 660 NVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTM 719

Query: 717 K 717
           +
Sbjct: 720 R 720