Pairwise Alignments

Query, 723 a.a., S1 RNA binding domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 557 a.a., 30S ribosomal subunit protein S1 from Escherichia coli BL21

 Score = 73.2 bits (178), Expect = 3e-17
 Identities = 37/82 (45%), Positives = 59/82 (71%), Gaps = 1/82 (1%)

Query: 636 AEGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPAEVVAPG 695
           AE    ++++Q GME+ GIV N+T +GAFVD+G   DGL+H++ +A + V+ P+E+V  G
Sbjct: 180 AERDQLLENLQEGMEVKGIVKNLTDYGAFVDLG-GVDGLLHITDMAWKRVKHPSEIVNVG 238

Query: 696 RKVRVRVLDVDRQRERINLTLK 717
            ++ V+VL  DR+R R++L LK
Sbjct: 239 DEITVKVLKFDRERTRVSLGLK 260



 Score = 56.6 bits (135), Expect = 3e-12
 Identities = 33/72 (45%), Positives = 48/72 (66%), Gaps = 3/72 (4%)

Query: 648 GMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQL--ADRFVRDPAEVVAPGRKVRVRVLDV 705
           G +L G VTN+T +G FV+I    +GLVHVS++   ++ +  P++VV  G  V V VLD+
Sbjct: 277 GTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIH-PSKVVNVGDVVEVMVLDI 335

Query: 706 DRQRERINLTLK 717
           D +R RI+L LK
Sbjct: 336 DEERRRISLGLK 347



 Score = 44.7 bits (104), Expect = 1e-08
 Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 7/84 (8%)

Query: 635 FAEGVNKVDDVQPGMELPGIVTNVTKFGAFVDIGVHRDGLVHVSQLADRFVRDPA-EVVA 693
           FAE  NK D V+      G + ++T FG F+ +    DGLVH+S ++     + A     
Sbjct: 357 FAETHNKGDRVE------GKIKSITDFGIFIGLDGGIDGLVHLSDISWNVAGEEAVREYK 410

Query: 694 PGRKVRVRVLDVDRQRERINLTLK 717
            G ++   VL VD +RERI+L +K
Sbjct: 411 KGDEIAAVVLQVDAERERISLGVK 434