Pairwise Alignments

Query, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 97.4 bits (241), Expect = 1e-24
 Identities = 78/255 (30%), Positives = 123/255 (48%), Gaps = 23/255 (9%)

Query: 177 QVMLEVKVAEMRRNVMERLGIDLTYAW--RGDFIFGMLNQLFTLDSQKGVVDAGPSGAVL 234
           QV +E  +AE+        GI    A    GD + G+L   F     + +++     A  
Sbjct: 403 QVYVESLIAEVNAEKAAEFGIQWQGALGSSGDRVIGLLGTNFGTGG-RNILELAQGNATP 461

Query: 235 SPNVN-GAFRITSGQVSIMGFLD-VLKQNGLVKVLAEPTLVCRSGEKAEFLAGGEIPIPV 292
           SP +N G  R T+G V ++GFL   L++NG   VL+ P L+    E+A+ + G  +P   
Sbjct: 462 SPGMNLGLARRTNG-VYVLGFLARFLQENGEGNVLSTPNLLTLDNEEAKIVIGQNVPFVT 520

Query: 293 PQGLGTVA------------IEYKEFGVTLQFLPTVVGDGRISMKVAPEVSELDYTNVVQ 340
            Q   T +            IE K+ G+TL+  P +  +G I M +  EVS +  ++V  
Sbjct: 521 GQFTNTGSGGNNGSVNPFQTIERKDVGLTLRVKPQISENGTIKMTIYQEVSNVVPSSVNS 580

Query: 341 IQGFTIPAITSRRA-STTVELADGQSFAIAGLLRDDVRQAVNKYPVLGDMPVLGTLFRSS 399
             G     IT++R   +TV + DG    + GLL+D+      K P LGD+P+ G LFRS 
Sbjct: 581 TTGL----ITNKRTIESTVLVEDGAVVVLGGLLQDEYAGNQEKVPGLGDVPIFGNLFRSE 636

Query: 400 NWQKNETELVIIVTP 414
              + +T L++ + P
Sbjct: 637 TRSRKKTNLMVFLRP 651