Pairwise Alignments

Query, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 495 a.a., Flp pilus assembly protein, secretin CpaC from Magnetospirillum magneticum AMB-1

 Score =  262 bits (670), Expect = 2e-74
 Identities = 162/451 (35%), Positives = 252/451 (55%), Gaps = 27/451 (5%)

Query: 38  AASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQVYVTGKKAGTTTLTLWDG 97
           AA+  +QV  GKS  +     V  + I +  IA V+V +P  V++TG+  G T + L D 
Sbjct: 64  AAAESMQVPVGKSIDLPLPGAVKEVVIGNSDIADVIVRTPHMVHITGRAVGQTNVFLMDR 123

Query: 98  GGAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRSAASMTTAMDM 157
            G V+   D+ V  D   +K+ L  VLP E  I V  V D++ L+G+V++  +   A  +
Sbjct: 124 SGRVMRRIDLAVAIDSQAVKDALRAVLPEERAITVEAVADSLYLSGSVKNDGAARDAKMV 183

Query: 158 ARLYAPD--KVTNLMQVGGVHQVMLEVKVAEMRRNVMERLGIDLTYAWRGDFIFGMLN-Q 214
           AR +  D  K+ N+++V    QV+L VKVAE++R V++ LG  LT A +   + G  +  
Sbjct: 184 ARRFVADDGKLVNMIRVVNEQQVLLHVKVAEIQRTVLKELGFGLT-ANKSISLPGTASLS 242

Query: 215 LFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQVSIMGFLDVLKQNGLVKVLAEPTLVC 274
            FT  S  G++D+  +    +  V G   + +         ++L+  GL++ L EP L  
Sbjct: 243 SFTTSSTVGLIDSSSTAIFGTATVTGLGALAAN-------FNILENQGLIRTLVEPNLTA 295

Query: 275 RSGEKAEFLAGGEIPIPVPQGLGTVAIEYKEFGVTLQFLPTVVGDGRISMKVAPEVSELD 334
            SGE A  LAGGE+PIPV    G++++E+K +GV L F P V+  GR+S+K++ EVS +D
Sbjct: 296 VSGETATMLAGGELPIPVSTTNGSISVEFKPYGVLLSFTPVVLDPGRLSLKMSTEVSAID 355

Query: 335 YTNVVQIQG-FTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQAVNKYPVLGDMPVLG 393
             N   I    ++PA   RRA +TVEL  G S  IAGLL++D+   +   P L D+PVLG
Sbjct: 356 TANKTAITTTISVPAFKVRRAGSTVELPSGGSIMIAGLLQNDITANIAGLPGLMDLPVLG 415

Query: 394 TLFRSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYREPSAFEYFILGRMEGSRRAD 453
            LFRS+ +Q+NETELV+I++ ++ +P++      P D +   S  + F+LGR++      
Sbjct: 416 ALFRSNAFQRNETELVVILSAYVIRPVDQPNLSTPNDGFAPSSDLKRFLLGRLQD----- 470

Query: 454 ATAAAARTYGTTGAG---APSGMEGAFGHML 481
                  TY T G G   AP  ++G +GH++
Sbjct: 471 -------TYTTRGKGEPAAPPALQGPYGHIV 494