Pairwise Alignments

Query, 484 a.a., type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 527 a.a., component of type IV pilus from Agrobacterium fabrum C58

 Score =  205 bits (521), Expect = 4e-57
 Identities = 143/475 (30%), Positives = 229/475 (48%), Gaps = 68/475 (14%)

Query: 43  LQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQVYVTGKKAGTTTLTLWDGGGAVI 102
           L++   K+ V+        + +AD ++A  V  + +++Y+ GK  G T + ++  GG  I
Sbjct: 66  LKLGLNKALVIDLPEDAHDILVADPSLADAVTRTSRRIYLFGKMVGQTNIFIFGDGGREI 125

Query: 103 GVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRSAASMTTAMDMARLYA 162
              D++V  DI+ L+  + R +P E+DI V  V+D + L G+VR+      A+ +A  + 
Sbjct: 126 VSLDLEVERDISGLEANIRRFIP-ESDIKVEIVSDNIVLTGSVRTPQDSARAVQLADAFL 184

Query: 163 P-----------------------------DKVTNLMQVGGVHQVMLEVKVAEMRRNVME 193
                                          ++ N++ + G  QV L+V VAE+ R V++
Sbjct: 185 KGGEATTRNISLTGGNNGGDAAIFAERRQVSQIVNMLTIEGEDQVTLKVTVAEVSRQVLK 244

Query: 194 RLGIDLTYAWRGDFIFGMLNQLFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQVS--- 250
           +LG +                + +  S  G   A PS   L   ++GA RI SG +    
Sbjct: 245 QLGFN--------------GSISSSTSGNGFEFANPSN--LGNAIDGASRIASGAIGSGS 288

Query: 251 --IMGFLDVLKQNGLVKVLAEPTLVCRSGEKAEFLAGGEIPIPVPQGLG----------T 298
                +L+ ++Q G+++ LAEP+L   SGE+A+F  GG+  +   Q +           T
Sbjct: 289 LRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRLAAEQEVDIDKETGRPTIT 348

Query: 299 VAIEYKEFGVTLQFLPTVVGDGRISMKVAPEVSELDYT-NVVQ------IQGFTIPAITS 351
                 ++G+TL F P V+  GRIS+K+   VSE  Y  NVV       I G T  ++  
Sbjct: 349 RTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGNGGRTIPGSTYMSVRK 408

Query: 352 RRASTTVELADGQSFAIAGLLRDDVRQAVNKYPVLGDMPVLGTLFRSSNWQKNETELVII 411
           R  STTVEL  G S  IAGL++D+VRQA++  P +  +P+ GTLFRS  + +NETELVII
Sbjct: 409 RETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLFRSKEFLRNETELVII 468

Query: 412 VTPHLAKPLEANATRLPTDAYREPSAFEYFILGRMEGSRRADATAAAARTYGTTG 466
            TP+L +P+  N    P D +   +    + + R+           AA   G+ G
Sbjct: 469 ATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRKDQVQAAPYQGSVG 523