Pairwise Alignments

Query, 565 a.a., oligopeptide-binding protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 532 a.a., Periplasmic dipeptide transport protein from Azospirillum sp. SherDot2

 Score =  153 bits (386), Expect = 2e-41
 Identities = 131/504 (25%), Positives = 213/504 (42%), Gaps = 40/504 (7%)

Query: 43  GEGFPPAGRPTAQEMAEDGGRIIMGSIGEPSNLISFLSSDASSHEVASQLYVGLLRYNRD 102
           G G   A        A+    ++  S G P N    L++  +S +VA  +Y  L+++   
Sbjct: 7   GAGLGMAAALALSAPAQAAKTLVYCSEGSPENFNPMLNTTGTSFDVALPVYNNLVQFEHG 66

Query: 103 -LEIEPWAAESYEVLDGGRLLRFKLRKGIRWQDGVEL------TADDVEFTYKLIIAPTT 155
             ++ P  AES+ + D G +  FKLR G +W    +        ADDV F+++    P  
Sbjct: 67  GTKVVPGLAESWTISDDGLVYTFKLRAGAKWHSVGDFKPTRDANADDVIFSFERQWKPEH 126

Query: 156 PT--------PYAGDFLAVQEFRKTGRYS-FEVRY-----DKPFARSLISWMQDIMPKHL 201
           P          Y  D    +  +   +     V++     + PF  +L      IM    
Sbjct: 127 PFHKISGGAYDYFNDMAMPKLLKSIEKVDDLTVKFTLNAVEAPFLANLAMPFAPIMSAEY 186

Query: 202 LEGQDVRTTP--FARKPVGAGPYMLESWEPGTRLVLRANPDYFEGRPHIDEVVYRIIPDN 259
                 + TP    + PVG GP+   +++    +  +A   Y+ G+  +D +V+ I PD 
Sbjct: 187 GAMLLKKGTPEKLDQVPVGTGPFQFVAYQKDAVIRYKAFEQYWGGKQPLDNLVFAITPDA 246

Query: 260 ATMFLELKAGKLDMMGLSPQQYLRQTDGYTWERDWRKYRYLSFGYTYLGYNLKHPFFADA 319
           A    +LKA +  +M   P       DG   +              Y+ +N+    F D 
Sbjct: 247 AVRLAKLKANECQIM---PYPNPADIDGMKKDTSIVVQEQEGLNVGYVSFNVTKKPFDDV 303

Query: 320 RVRRAIAHAIDREGIIKGVLLGQGVPTVGPYKPGTWVYNDRLTAYSYDPALAAEMLREAG 379
           RVRRA++ A+D++  +  V    GVP   P  P  W YND +  Y YD   A ++L +AG
Sbjct: 304 RVRRAVSMALDKKATVAAVYQAAGVPAKNPIPPTMWSYNDAIEDYPYDVERAKKLLADAG 363

Query: 380 WQD-TDGDGILDREGRPFAFTILTNQGNDQRIKTATIIQSQLKDVGIRVQIRTVEWAAFI 438
           + +  + D       RP+         N    + A ++Q+ L  VGI+ +I   EW  + 
Sbjct: 364 YPNGFETDLWAMPVQRPY---------NPNAKRVAEMMQADLAKVGIKAKIVQYEWGEYR 414

Query: 439 KEFVNTGRFDAVILGW-NITQDPD--AYDVWHSSKAEPGGLNFVGYRNAEVDAVLEKARR 495
           K  +  G     +LGW     DPD   Y +     A PGG N   + N E D ++ +A+R
Sbjct: 415 KR-MQQGEHQMGMLGWTGDNGDPDNFLYTLLGCEAARPGGNNLSKWCNKEFDDLVVQAKR 473

Query: 496 TFDQDERKQYYDRFQEIVHRDQPY 519
           T D   R + Y++ Q I   + P+
Sbjct: 474 TTDIAARTKLYEQAQVIFKEEAPW 497