Pairwise Alignments

Query, 956 a.a., excinuclease ABC, A subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 940 a.a., excinuclease ABC subunit A (NCBI) from Escherichia coli BW25113

 Score =  891 bits (2303), Expect = 0.0
 Identities = 462/949 (48%), Positives = 633/949 (66%), Gaps = 24/949 (2%)

Query: 6   IHIEGARQHNLKNVDIDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESLSAYARQ 65
           I + GAR HNLKN+++ IPRD+L+VV G SGSGKS+LAFD +YAEGQRRYVESLSAYARQ
Sbjct: 4   IEVRGARTHNLKNINLVIPRDKLIVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63

Query: 66  FLPQMDKPAVDKIEGLSPAISLEQQTSTRNPRSTVGTVTEVYDFLRVFYARLGRMYCPQC 125
           FL  M+KP VD IEGLSPAIS+EQ++++ NPRSTVGT+TE++D+LR+ +AR+G   CP  
Sbjct: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEIHDYLRLLFARVGEPRCPDH 123

Query: 126 GRPIEARAADEIIADILALGEGTRCIIMAPLVEHQKGTHADRFKKLKAEGFVRVRVNGET 185
             P+ A+   +++ ++L+  EG R +++AP+++ +KG H    + L ++G++R R++GE 
Sbjct: 124 DVPLAAQTVSQMVDNVLSQPEGKRLMLLAPIIKERKGEHTKTLENLASQGYIRARIDGEV 183

Query: 186 TTIDDVPPLDKNRKHCIDLVVDRIVVKEGIRGRLADSVELALRYGNGRLVV---EVPGQG 242
             + D P L+  +KH I++VVDR  V++ +  RLA+S E AL    G  VV   + P   
Sbjct: 184 CDLSDPPKLELQKKHTIEVVVDRFKVRDDLTQRLAESFETALELSGGTAVVADMDDPKAE 243

Query: 243 ETVHSTESVCPSCRISLPAPSPQLFSFNSPQGACPHCSGLGSVDYFEPALLAPNRGLSLN 302
           E + S    CP C  S+    P+LFSFN+P GACP C GLG   YF+P  +  N  LSL 
Sbjct: 244 ELLFSANFACPICGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQNPELSLA 303

Query: 303 TGALLPWKNPRVFARWQADLEKLAKRFGVTLSTPLSAWPAAGLEVLFHGDGSLPHAAAGD 362
            GA+  W   R F  +Q  L+ LA  +   +  P  +  A   +V+ +G G         
Sbjct: 304 GGAIRGWDR-RNFYYFQM-LKSLADHYKFDVEAPWGSLSANVHKVVLYGSGK-------- 353

Query: 363 EGSGGGADTRKKGRRGADEAFGPPTGWSGVTQLLESGMQYGD--AWRDEMSRYRQSRPCP 420
                  + +    RG       P  + GV   +E   +  +  A R+E++++  +RPC 
Sbjct: 354 ----ENIEFKYMNDRGDTSIRRHP--FEGVLHNMERRYKETESSAVREELAKFISNRPCA 407

Query: 421 ACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRERSFDGRHTLVAEPLLKELTHRL 480
           +C G RLR EA  V V++  + +   +S+  A+ +       G+   +AE +LKE+  RL
Sbjct: 408 SCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGDRL 467

Query: 481 EFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVTYVLDEPSIGLHPRDNERL 540
           +F+VNVGL+Y++L R+  TLSGGEAQRIRLASQ+G+GLVGV YVLDEPSIGLH RDNERL
Sbjct: 468 KFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERL 527

Query: 541 IRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGTADTL 600
           + TL  L+  GNTV+VVEHDE  IR AD VI++GPG+G  GGEVV  G +  ++   ++L
Sbjct: 528 LGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVPESL 587

Query: 601 TARYLRGEMTIPLPESR--RKGDGALTLRGVTTNNLQGLDCSIPFGVLTCVTGVSGSGKS 658
           T +Y+ G+  I +P+ R     +  L L G   NNL+ +  ++P G+ TC+TGVSGSGKS
Sbjct: 588 TGQYMSGKRKIEVPKKRVPANPEKVLKLTGARGNNLKDVTLTLPVGLFTCITGVSGSGKS 647

Query: 659 SLVVDTLYKHVALA-RGIKVDSPGSIGGIDGLDRIERIVAIDQTPIGRTPRSNPATYTKI 717
           +L+ DTL+        G  +  P     I GL+  ++++ IDQ+PIGRTPRSNPATYT +
Sbjct: 648 TLINDTLFPIAQRQLNGATIAEPAPYRDIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGV 707

Query: 718 FDEIRDIFAMTADARKRGYKPGRFSFNVRGGRCEACGGDGQLRVEMHFLPDVFVTCDVCK 777
           F  +R++FA   ++R RGY PGRFSFNVRGGRCEAC GDG ++VEMHFLPD++V CD CK
Sbjct: 708 FTPVRELFAGVPESRARGYTPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDIYVPCDQCK 767

Query: 778 GRRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYPVLERRLGVLEDVGLEYLRLGQPA 837
           G+RYN ETLE++YKG  I EVLD+T+ +AR+FF+  P L R+L  L DVGL Y+RLGQ A
Sbjct: 768 GKRYNRETLEIKYKGKTIHEVLDMTIEEAREFFDAVPALARKLQTLMDVGLTYIRLGQSA 827

Query: 838 TTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEVGKLIRVLHQLVDRGATVVV 897
           TTLSGGEAQR+K++REL KR    TLYILDEPTTGLH  ++ +L+ VLH+L D+G T+VV
Sbjct: 828 TTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFADIQQLLDVLHKLRDQGNTIVV 887

Query: 898 IEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIADSASVTGAFL 946
           IEHN DVI ++D ++DLGP GG  GG I+ +GTPE +    AS T  FL
Sbjct: 888 IEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAECEASHTARFL 936



 Score =  137 bits (345), Expect = 3e-36
 Identities = 74/194 (38%), Positives = 112/194 (57%), Gaps = 15/194 (7%)

Query: 773 CDVCKGRRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYPVLERRLGVLE-------- 824
           C  C+G R   E   V  +   +  + D+++  A +FF N  +  +R  + E        
Sbjct: 406 CASCEGTRLRREARHVYVENTPLPAISDMSIGHAMEFFNNLKLAGQRAKIAEKILKEIGD 465

Query: 825 ------DVGLEYLRLGQPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEV 878
                 +VGL YL L + A TLSGGEAQRI+++ ++G   L G +Y+LDEP+ GLH  + 
Sbjct: 466 RLKFLVNVGLNYLTLSRSAETLSGGEAQRIRLASQIGA-GLVGVMYVLDEPSIGLHQRDN 524

Query: 879 GKLIRVLHQLVDRGATVVVIEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIADS 938
            +L+  L  L D G TV+V+EH+ D I ++DHVID+GPG G +GG +V+ G  E I+A  
Sbjct: 525 ERLLGTLIHLRDLGNTVIVVEHDEDAIRAADHVIDIGPGAGVHGGEVVAEGPLEAIMAVP 584

Query: 939 ASVTGAFLVQERAI 952
            S+TG ++  +R I
Sbjct: 585 ESLTGQYMSGKRKI 598



 Score =  125 bits (314), Expect = 1e-32
 Identities = 69/190 (36%), Positives = 110/190 (57%), Gaps = 15/190 (7%)

Query: 418 PCPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRERSFDGRHTLVAEPLLKELT 477
           PC  C G R   E L ++     IH    +++  A  +     FD          +  L 
Sbjct: 762 PCDQCKGKRYNRETLEIKYKGKTIHEVLDMTIEEAREF-----FDA---------VPALA 807

Query: 478 HRLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVT-YVLDEPSIGLHPRD 536
            +L+ +++VGL YI LG++ +TLSGGEAQR++LA +L     G T Y+LDEP+ GLH  D
Sbjct: 808 RKLQTLMDVGLTYIRLGQSATTLSGGEAQRVKLARELSKRGTGQTLYILDEPTTGLHFAD 867

Query: 537 NERLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGT 596
            ++L+  L +L+ +GNT++V+EH+   I+ AD +++LGP  G+ GGE++ SG    +   
Sbjct: 868 IQQLLDVLHKLRDQGNTIVVIEHNLDVIKTADWIVDLGPEGGSGGGEILVSGTPETVAEC 927

Query: 597 ADTLTARYLR 606
             + TAR+L+
Sbjct: 928 EASHTARFLK 937