Pairwise Alignments
Query, 956 a.a., excinuclease ABC, A subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710
Subject, 981 a.a., excinuclease ABC subunit UvrA from Brevundimonas sp. GW460-12-10-14-LB2
Score = 887 bits (2291), Expect = 0.0
Identities = 464/956 (48%), Positives = 634/956 (66%), Gaps = 32/956 (3%)
Query: 6 IHIEGARQHNLKNVDIDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESLSAYARQ 65
I + GAR+HNLK VD+DIPR++LVV+ G SGSGKS+LAFD +YAEGQRRYVESLSAYARQ
Sbjct: 8 IRVRGAREHNLKGVDLDIPREQLVVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQ 67
Query: 66 FLPQMDKPAVDKIEGLSPAISLEQQTSTRNPRSTVGTVTEVYDFLRVFYARLGRMYCPQC 125
FL M KP VD IEGLSPAIS+EQ+T+++NPRSTVGTVTE++D++R+ +AR+G Y P
Sbjct: 68 FLELMGKPDVDLIEGLSPAISIEQKTTSKNPRSTVGTVTEIHDYMRLLWARVGVPYSPAT 127
Query: 126 GRPIEARAADEIIADILALGEGTRCIIMAPLVEHQKGTHADRFKKLKAEGFVRVRVNGET 185
G PIE++ +++ ++AL +G R +++AP+V +KG + + + +GF R++++G+
Sbjct: 128 GLPIESQTVSQMVDKLVALPDGERILLLAPVVRGRKGEYKKEIAEWQRQGFQRLKIDGQF 187
Query: 186 TTIDDVPPLDKNRKHCIDLVVDRIVVKEGIRGRLADSVELALRYGNGRLVVE--VPGQGE 243
ID+ P LDK KH ID+VVDRIV K R ADS++ AL +G E +GE
Sbjct: 188 YPIDEAPTLDKKFKHDIDIVVDRIVTKPDQEARYADSLQTALGLADGIANAEWASTAEGE 247
Query: 244 T-----VHSTESVCPSCRISLPAPSPQLFSFNSPQGACPHCSGLGSVDYFEPALLAPNRG 298
T + S CP ++ P+LFSFN+P GACP C GLG F+ L+ P+R
Sbjct: 248 TAPRSILFSERFACPVSGFTISEIEPRLFSFNNPFGACPVCDGLGVKLAFDADLVIPDRD 307
Query: 299 LSLNTGALLPW-KNPRVFARWQADLEKLAKRFGVTLSTPLSAWPAAGLEVLFHGDGSLPH 357
+L+ GA+ PW + P + L+ L+ +G ++ P PA + + HG GS
Sbjct: 308 KTLHKGAVAPWARGPSPL--YTQTLQSLSLHYGFSMDKPWRDLPAQAHKAILHGTGSEKI 365
Query: 358 AAAGDEGSGGGADTRKKGRRGADEAFGPPTGWSGVTQLLESGMQYGD-AW-RDEMSRYRQ 415
D+ + + + GV LE + D AW R+E++RY+
Sbjct: 366 KFVYDDNA---------------RKYEVSKPFEGVLPNLERRWRETDSAWVREELARYQS 410
Query: 416 SRPCPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLR--ERSFDGRHTLVAEPLL 473
PC ACHG RL+PEAL+V+V DI +LS+++A W E + + +A +L
Sbjct: 411 ETPCDACHGKRLKPEALAVKVGGEDIADISTLSISKAYLWFSTLEENLTEKQMEIARRIL 470
Query: 474 KELTHRLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVTYVLDEPSIGLH 533
KE+ RL F+ NVGLDY++L R+ TLSGGE+QRIRLASQ+GSGL GV YVLDEPSIGLH
Sbjct: 471 KEICDRLRFLNNVGLDYLNLSRSSGTLSGGESQRIRLASQIGSGLTGVLYVLDEPSIGLH 530
Query: 534 PRDNERLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDL 593
RDN RL+ +L+ L+ GN+VLVVEHDE I AD VI++GP +G GG+V G +
Sbjct: 531 QRDNTRLLESLKGLRDLGNSVLVVEHDEEAILTADYVIDMGPAAGVHGGQVCAEGTPAQV 590
Query: 594 LGTADTLTARYLRGEMTIPLPESRRKGDGA---LTLRGVTTNNLQGLDCSIPFGVLTCVT 650
+ +LT +YL GE I +P R+ L + G + NNL+ + IP GV TC+T
Sbjct: 591 MANPKSLTGKYLTGEREIEIPAEGRRPINRKRMLKISGASGNNLKSVTGEIPVGVFTCIT 650
Query: 651 GVSGSGKSSLVVDTLYKHVALARGIKVDSPGSIGGIDGLDRIERIVAIDQTPIGRTPRSN 710
GVSG GKS+ ++TLYK A ++P I+GL+ ++++ IDQ+PIGRTPRSN
Sbjct: 651 GVSGGGKSTFTIETLYKAAARRLNNASEAPAPFDRIEGLEHFDKVIDIDQSPIGRTPRSN 710
Query: 711 PATYTKIFDEIRDIFAMTADARKRGYKPGRFSFNVRGGRCEACGGDGQLRVEMHFLPDVF 770
PATYT F IRD +A +++ RGY PGRFSFNV+GGRCEAC GDG +++EMHFLPDV+
Sbjct: 711 PATYTGAFGPIRDWYAGLPESKARGYGPGRFSFNVKGGRCEACQGDGVIKIEMHFLPDVY 770
Query: 771 VTCDVCKGRRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYPVLERRLGVLEDVGLEY 830
VTCDVCKG+RYN ETLE+ +KG +I++VLD+TV +A FF+ P + ++ LE VGL Y
Sbjct: 771 VTCDVCKGKRYNRETLEIVFKGKSISDVLDMTVEEAASFFKAVPPIRDKMLTLERVGLGY 830
Query: 831 LRLGQPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMHEVGKLIRVLHQLVD 890
+++GQPATTLSGGEAQR+K+S+EL KR+ TLYILDEPTTGLH + KL+ VL +LV+
Sbjct: 831 VKVGQPATTLSGGEAQRVKLSKELSKRATGRTLYILDEPTTGLHFEDTRKLLEVLQELVE 890
Query: 891 RGATVVVIEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIADSASVTGAFL 946
G T+VVIEHN DVI +D+++D GP GG+ GG IV+ GTPE++ + AS TG +L
Sbjct: 891 AGNTIVVIEHNLDVIKVADYLLDFGPEGGDGGGEIVAVGTPEQVADNKASWTGKYL 946
Score = 142 bits (359), Expect = 8e-38
Identities = 76/196 (38%), Positives = 121/196 (61%), Gaps = 17/196 (8%)
Query: 773 CDVCKGRRYNHETLEVRYKGLNIAEVLDLTVRQARQFFENYP-------------VLER- 818
CD C G+R E L V+ G +IA++ L++ +A +F +L+
Sbjct: 414 CDACHGKRLKPEALAVKVGGEDIADISTLSISKAYLWFSTLEENLTEKQMEIARRILKEI 473
Query: 819 --RLGVLEDVGLEYLRLGQPATTLSGGEAQRIKISRELGKRSLPGTLYILDEPTTGLHMH 876
RL L +VGL+YL L + + TLSGGE+QRI+++ ++G L G LY+LDEP+ GLH
Sbjct: 474 CDRLRFLNNVGLDYLNLSRSSGTLSGGESQRIRLASQIGS-GLTGVLYVLDEPSIGLHQR 532
Query: 877 EVGKLIRVLHQLVDRGATVVVIEHNTDVILSSDHVIDLGPGGGENGGRIVSAGTPEEIIA 936
+ +L+ L L D G +V+V+EH+ + IL++D+VID+GP G +GG++ + GTP +++A
Sbjct: 533 DNTRLLESLKGLRDLGNSVLVVEHDEEAILTADYVIDMGPAAGVHGGQVCAEGTPAQVMA 592
Query: 937 DSASVTGAFLVQERAI 952
+ S+TG +L ER I
Sbjct: 593 NPKSLTGKYLTGEREI 608
Score = 109 bits (273), Expect = 8e-28
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 17/202 (8%)
Query: 419 CPACHGARLRPEALSVRVDDLDIHSFCSLSVARALAWLRERSFDGRHTLVAEPLLKELTH 478
C C G R E L + I ++V A ++ + A P +++
Sbjct: 773 CDVCKGKRYNRETLEIVFKGKSISDVLDMTVEEAASFFK-----------AVPPIRDKML 821
Query: 479 RLEFMVNVGLDYISLGRNMSTLSGGEAQRIRLASQLGSGLVGVT-YVLDEPSIGLHPRDN 537
LE VGL Y+ +G+ +TLSGGEAQR++L+ +L G T Y+LDEP+ GLH D
Sbjct: 822 TLE---RVGLGYVKVGQPATTLSGGEAQRVKLSKELSKRATGRTLYILDEPTTGLHFEDT 878
Query: 538 ERLIRTLRRLQQRGNTVLVVEHDEATIREADTVIELGPGSGALGGEVVFSGRVPDLLGTA 597
+L+ L+ L + GNT++V+EH+ I+ AD +++ GP G GGE+V G +
Sbjct: 879 RKLLEVLQELVEAGNTIVVIEHNLDVIKVADYLLDFGPEGGDGGGEIVAVGTPEQVADNK 938
Query: 598 DTLTARYLRGEMTIPLPESRRK 619
+ T +YL+ + E RRK
Sbjct: 939 ASWTGKYLK--EVLDRHEDRRK 958
Score = 54.3 bits (129), Expect = 4e-11
Identities = 39/118 (33%), Positives = 53/118 (44%), Gaps = 13/118 (11%)
Query: 3 KHCIHIEGARQHNLKNVDIDIPRDELVVVCGPSGSGKSTLAFDIVYAEGQRRYVESLSAY 62
K + I GA +NLK+V +IP + G SG GKST + +Y RR + A
Sbjct: 621 KRMLKISGASGNNLKSVTGEIPVGVFTCITGVSGGGKSTFTIETLYKAAARRLNNASEAP 680
Query: 63 ARQFLPQMDKPAVDKIEGL---SPAISLEQQTSTRNPRSTVGTVTEVYDFLRVFYARL 117
A D+IEGL I ++Q R PRS T T + +R +YA L
Sbjct: 681 A----------PFDRIEGLEHFDKVIDIDQSPIGRTPRSNPATYTGAFGPIRDWYAGL 728