Pairwise Alignments

Query, 312 a.a., TPR domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 996 a.a., DNA uptake lipoprotein from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 43.9 bits (102), Expect = 2e-08
 Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 1/106 (0%)

Query: 199 ISSFNSRNYKDALKSFKDFTDTFPNHKLTSNAWFWQGETNFQMNNFPAAALAYEQVISKF 258
           + +F +RN ++A+         +PN +   +  F + + N + +N+ AA   Y  +I+K 
Sbjct: 588 VLNFQNRN-REAVAELDRAISQYPNSRFRDDIIFQKAQINMEESNYAAAREGYSNLINKS 646

Query: 259 PKSSKLPSALLKQGICFYKTGKKDAGKIRLEELIKKHPDSPEAKRA 304
           P S  +P AL  + I  Y     D      ++++ ++P++  A  A
Sbjct: 647 PNSPFVPYALEGRAIASYSLKNYDQTINDYKKILDRYPNADNANAA 692



 Score = 35.0 bits (79), Expect = 8e-06
 Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 36/151 (23%)

Query: 195 YDTGISSFNSRNYKDALKSFKDFTDTFPNHKLTSNAWFWQG-------------ETNFQM 241
           Y+   + F  ++Y+ A+++F+ +   +PN      A ++ G             ET +Q+
Sbjct: 731 YEAAKNLFFGQSYQQAIRAFQTYLSNYPNSAQKQEATYFIGDAYLRLEQEEKALETFYQL 790

Query: 242 NNFPAAALA----------------YEQVISKFPKSSKLPSALLKQG-------ICFYKT 278
               A++                  Y+Q I  F  S+K+    ++Q        + +Y+T
Sbjct: 791 EKMGASSQRAKAIQRIAEIEFNRKNYQQAIPYFITSTKVARDRIEQYEANKGLMMAYYET 850

Query: 279 GKKDAGKIRLEELIKKHPDSPEAKRAQQYIK 309
           GK D+      ++I+    + +AK   Q IK
Sbjct: 851 GKYDSADFYANKVIELGDVTADAKSNAQLIK 881



 Score = 32.7 bits (73), Expect = 4e-05
 Identities = 34/134 (25%), Positives = 58/134 (43%), Gaps = 14/134 (10%)

Query: 183 PAAPAADTATALYDTGISSFNSRNYKDALKSFKDFTDTFPNHK-LTSNAWFWQGETNFQM 241
           PA  AA      Y  G++ + ++ Y  A+  F D + T+P  K +   A++ +GE     
Sbjct: 420 PAIRAAYQKVTYYQ-GLTYYRNKQYNQAITYF-DKSITYPVDKEIVHEAFYRKGEAFAAK 477

Query: 242 NNFPAAALAYEQVISKFPKSSKLPSALLKQ----GICFYKTGKKDAGKIRLEELIKKHPD 297
            +   A  AYEQV++   + + L  AL+K     G  ++ T +      + E   K + D
Sbjct: 478 EDLKGAITAYEQVMNM--RLTSLDPALIKSHYGLGYAYFNTQE----YAKAERQFKSYTD 531

Query: 298 S-PEAKRAQQYIKD 310
              +    Q Y  D
Sbjct: 532 KIKKVSNVQSYYDD 545



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 11/64 (17%), Positives = 29/64 (45%)

Query: 206 NYKDALKSFKDFTDTFPNHKLTSNAWFWQGETNFQMNNFPAAALAYEQVISKFPKSSKLP 265
           NY  A + + +  +  PN      A   +   ++ + N+      Y++++ ++P +    
Sbjct: 631 NYAAAREGYSNLINKSPNSPFVPYALEGRAIASYSLKNYDQTINDYKKILDRYPNADNAN 690

Query: 266 SALL 269
           +AL+
Sbjct: 691 AALV 694



 Score = 26.9 bits (58), Expect = 0.002
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 193 ALYDTGISSFNSRNYKDALKSFKDFTDTFPN 223
           AL    I+S++ +NY   +  +K   D +PN
Sbjct: 655 ALEGRAIASYSLKNYDQTINDYKKILDRYPN 685



 Score = 26.6 bits (57), Expect = 0.003
 Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)

Query: 183 PAAPAADTATALYDTGISSFNSRNYKDALKSFKDFTDTFPNHKLTSNAWFWQGETNFQMN 242
           P  P A+ A  L   G   F+ R+YK +++++          +  S  +F  G   FQ+ 
Sbjct: 95  PNDPKANEAAFLM--GDYYFDKRHYKKSIEAYNLVNVDVVTFEQRSKVYFKTGYAYFQLK 152

Query: 243 NFPAAALAYEQV 254
           ++  AA  ++ V
Sbjct: 153 DYANAARYFDPV 164