Pairwise Alignments

Query, 1160 a.a., transcription-repair coupling factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score =  649 bits (1675), Expect = 0.0
 Identities = 414/1153 (35%), Positives = 631/1153 (54%), Gaps = 49/1153 (4%)

Query: 25   GMATAARLGNAVLDAGRSAVMVVRDAEELALARGLLTLFSPDASAGDSPLVKPRWESRWV 84
            G A +  +  A   A R  +++  D++        L+ F+PD       L  P WE+   
Sbjct: 23   GAALSLAIAEAASAAKRFTLLLTADSQSAERLEQELSFFAPDLPV----LHFPDWET--- 75

Query: 85   VMPQHPLGARNRDAWASRMAALFALGQKRVPQGVLIT-VDNFLSKLPPADLFASHELTLA 143
             +P + L + ++D  + R+A+L+ L +  +  GVL+  +   L +L P        L L 
Sbjct: 76   -LP-YDLFSPHQDIISQRIASLYRLPE--LAHGVLVVPITTALHRLAPTKFLLGSSLVLD 131

Query: 144  CGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPGYERPLRLEFFGETLEE 203
             G ++  E +  +    G+  V  V   GE AVRG ++D++P G + P R++ F + +E 
Sbjct: 132  IGQKLDVEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIET 191

Query: 204  IRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSKATARWKRLFSKGMLTEEQYAGLLRG 263
            +R FD  NQRS+ K+D + LLP     L  +  ++  AR++  F         +  L  G
Sbjct: 192  LRTFDPENQRSIDKVDSVKLLPAREFPLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSG 251

Query: 264  IERHGEGLMPGAYYEAPTVVEEWLPRDA-AWILPGRKELVDAVEAAQQNWEALFDKQAEE 322
            I   G       +++  + + ++LP+D   + LPG ++      AA+  W  + ++  E 
Sbjct: 252  ITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQ------AAENFWNDVRNRYEER 305

Query: 323  GGARQPRGLVLRDAAPVRQLYEEKDSAGFEPLVMGVERTGVDMPERKLHGFVDLFPAPDA 382
                  R    R   P  +L+   +       +    R      + +     + FPA   
Sbjct: 306  ------RVDPSRPLLPPAELFLPVEDCFAR--LKSWPRVVASQQDVETGAGRERFPAATL 357

Query: 383  RDRPWQALVA----GLHRFVATHARVLLCFGNERGRRK-FLKLAEQDGITP-TLRYDP-- 434
             D   QA        L  F+      +L      GRR+  L+L E+  + P T+   P  
Sbjct: 358  PDLAIQAKATQPLEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRPKTVDSWPDF 417

Query: 435  -KGRGLMAV-VAPYRAGVELAWDGTLVIGEDVL-----QPKTDRSARVASGAFRGLDKHE 487
             K +  +A+ +AP   G+ L      +I E  L       +  R  R  +     +    
Sbjct: 418  VKSKERLAITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLT 477

Query: 488  GLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLLLEYAGDDRLYLPVDRLSLVQRFKGA 547
             L+ G  +VH D+GV R++GL+ +++     +FL +EYA   +LY+PV  L L+ R+ G+
Sbjct: 478  ELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTMEYAEGAKLYVPVANLHLIARYTGS 537

Query: 548  DDTKPSLDRLGGGAWQSSKDKARKAIEKIAADLVEMYAYRKIAKGYTYGPIGELYREFEA 607
            DD    L RLG   WQ +K KA + +  +AA+L+++YA R   +GY +      Y  F A
Sbjct: 538  DDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKADYATFSA 597

Query: 608  SFGFEETPDQARAIQDVLEDMDKPVPMDRLVCGDVGFGKTEVALRAAFRAASEGRQVALL 667
             F FEETPDQ   I+ V  DM  P PMDRLVCGDVGFGKTEVA+RAAF A   G+QVA+L
Sbjct: 598  GFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAIL 657

Query: 668  CPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSKQKQTEVLAAAAKGHVDILIGTHRLLS 727
             PTT+LA+QHY +FR R A +PV V ++SRF S ++    +A  A+G +DI+IGTH+LLS
Sbjct: 658  VPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLS 717

Query: 728  DDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVDALTLTATPIPRTLQLSMSGIRELSV 787
            DDV++ NLGL+++DEE RFGVR KE+LK  R  VD LTLTATPIPRTL +++SG+R+LS+
Sbjct: 718  DDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSI 777

Query: 788  IETAPPERKPVATALIERDDAALKSILEREIAREGQVFWVHNRVQGLERTTEYVRKLVPD 847
            I T P  R  V T ++E++ + +K  L RE+ R GQV+++HN V+ +E+    + +LVP+
Sbjct: 778  IATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPE 837

Query: 848  ARVGMAHGQMTERALEETMHRFWHGELDVLVCTAIVESGLDFPRANTLIVDQAQMFGLGQ 907
            AR+ + HGQM ER LE+ M  F+H   +VL+ + I+E+G+D P ANT+I+++A  FGL Q
Sbjct: 838  ARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQ 897

Query: 908  LYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERMRVILDMDYLGAGFQVAMEDLRIRGA 967
            L+QLRGRVGRS  QAYA  + P    ++  A +R+  I +   LGAGF +A  DL IRGA
Sbjct: 898  LHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGA 957

Query: 968  GNILGEAQSGHMTRVGLELFLEMLEEAVTRL-KGDPPRESVE----TELNIGIPAHIPEG 1022
            G +LG+ QSG +  VG  L++EMLE AV  + KG+ P          E+N+ +PA IPE 
Sbjct: 958  GELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEE 1017

Query: 1023 YIEDARDRLRFYKALSSATDAAAQQDIEMEMRDRYGVFPPELETFLALLVLKRQLRRMQV 1082
            Y+ D   RL  YK ++SATD    +D+++EM DR+G+ P   +  + L +LK Q  ++ +
Sbjct: 1018 YLPDVHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGI 1077

Query: 1083 QRADIYPDKVRLVWDERQTAVDIGRLIEWVGQHADRARLQPPATLEWRLDTGLAAGARLD 1142
            ++ D  P   R+ + E QT VD   LI+ +    +R + +  ATL   +     A  R +
Sbjct: 1078 KKVDAGPQGGRIEF-EAQTPVDPLVLIKLIQGQPNRYKFE-GATLFKFMVPMERAEERFN 1135

Query: 1143 AMRGELFRLVPDS 1155
             +     RL+P S
Sbjct: 1136 TLEALFERLIPKS 1148