Pairwise Alignments

Query, 1160 a.a., transcription-repair coupling factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1159 a.a., transcription-repair coupling factor from Magnetospirillum magneticum AMB-1

 Score =  627 bits (1618), Expect = 0.0
 Identities = 407/1144 (35%), Positives = 608/1144 (53%), Gaps = 60/1144 (5%)

Query: 9    RKLASKGCGHIEVTRSGMATAARLGNAVLDAGRSAVMVVRDAEELALARGLLTLFSPDAS 68
            RKLA    G   +  + +A        +L   R    + R AE LA        F+PD  
Sbjct: 14   RKLAGAPEGRDALLLAELAAGGCAQGGILHVARDEGRMARVAEALAF-------FAPDLQ 66

Query: 69   AGDSPLVKPRWESRWVVMPQHPLGARNRDAWASRMAALFALGQK-RVPQGVLITVDNFLS 127
              + P         W  +P   +   + D  A R+  L  L    +    VL TV     
Sbjct: 67   VLEFP--------GWDCVPYDRVSP-HVDMVARRIDTLARLADGVKGAFVVLTTVPGLAQ 117

Query: 128  KLPPADLFASHELTLACGDEMAPELVLEQAVDWGFDRVQMVSRPGEIAVRGDIVDIYPPG 187
            ++PP +  AS  L    G  ++ + ++      G+ R   V  PGE AVRG IVD+YPPG
Sbjct: 118  RVPPREALASATLDARKGSRLSMDKLIGFLSKNGYVRADTVMEPGEYAVRGGIVDLYPPG 177

Query: 188  YERPLRLEFFGETLEEIRLFDASNQRSLGKLDEMVLLPVSPVVLSAELRSKATARWKRLF 247
               PLRL+FFG+ ++ +R FD  +QR+ G +   V  PVS V L     ++    ++ +F
Sbjct: 178  SAEPLRLDFFGDEIDSVRSFDPMSQRTTGPMAGFVCRPVSEVGLDDASIARFRTNYREMF 237

Query: 248  SKGMLTEEQYAGLLRGIERHGEGLMPGAYYEAPTVVEEWLPRDAAWILPGRKELVDAVEA 307
                  +  Y  +  GI+ +G       +++    +  ++P +AA +L  + +  +A+ A
Sbjct: 238  GVISGPDPLYEAISEGIKFNGMEHWLPLFHDGLDTLFAYVP-EAAVVLDHQSD--EALTA 294

Query: 308  AQQNWEALFDKQAEEGGARQPR-GLVLRDAAPVRQLYEEKD------------------S 348
                    FD +A   GA     G+V     P R   E  +                   
Sbjct: 295  RHALVLEYFDARAGLAGAGLTESGMVYHPILPERLYLERAEWDRLLAARPVLHLSPFDAV 354

Query: 349  AGFEPLVMGVERTGVDMPERKLHGFVDLFPAPDARDRPWQALVAGLHRFVATHARVLLCF 408
             G E  V    R G D  + +    V+++     R+   +   AG         RV++  
Sbjct: 355  EGDEGAVDAGGRLGRDFADMRARPGVNVYDC--VREHAEEQAKAG--------RRVVIAA 404

Query: 409  GNERGRRKFLKLAEQDGIT--PTLRYDPKGRGL-MAVVAPYRAGVELAW---DGTLVIGE 462
              +  R +   +    GI    T+    + +GL    VA    G++  +   D  ++  +
Sbjct: 405  WTQGSRDRLAGVLRDHGIKGIETVESWAEAQGLDKGRVAVAVLGLDHGFATPDLAVITEQ 464

Query: 463  DVLQPKTDRSARVASGAFRGLDKHEGLQPGDLLVHRDYGVARFVGLERMDLGGVGNDFLL 522
            D+L  +  R AR      + + +   L  GDL+VH ++G+ R+ GL  +++ G  +D L 
Sbjct: 465  DILGDRLARPARKKKKGAQFIAEASALAEGDLVVHVEHGIGRYDGLVALEVSGAPHDCLR 524

Query: 523  LEYAGDDRLYLPVDRLSLVQRFKGADDTKPSLDRLGGGAWQSSKDKARKAIEKIAADLVE 582
            + Y G D+L++PV+ + ++ RF G++    SLD+LGG AWQ+ K K +K I  IA  L+ 
Sbjct: 525  VLYDGGDKLFVPVENIDVLTRF-GSEQAGVSLDKLGGTAWQARKAKLKKRIRDIADQLIG 583

Query: 583  MYAYRKIAKGYTYGPIGELYREFEASFGFEETPDQARAIQDVLEDMDKPVPMDRLVCGDV 642
            + A RK+ +G    P   LY EF A F F ET DQ RAI+D + D+    PMDRL+CGDV
Sbjct: 584  IAAQRKMRQGEALVPAEGLYDEFCARFPFAETEDQMRAIEDSIADLASGKPMDRLICGDV 643

Query: 643  GFGKTEVALRAAFRAASEGRQVALLCPTTVLAEQHYQTFRSRLAGFPVNVGMLSRFVSKQ 702
            GFGKTEVA+R AF AA +G QVA++ PTT+LA QHY+TF+ R +G PV V  LSR V+ +
Sbjct: 644  GFGKTEVAMRVAFVAALQGLQVAVVVPTTLLARQHYRTFKERFSGLPVRVEQLSRLVTAK 703

Query: 703  KQTEVLAAAAKGHVDILIGTHRLLSDDVRLPNLGLLVLDEEQRFGVRHKEKLKQFRRNVD 762
              +EV A  A G VD+++GTH LL+  +    LGLL++DEEQ FGV HKE+LKQ + +V 
Sbjct: 704  TASEVKAGVADGSVDVVVGTHALLAKGIGFKRLGLLIIDEEQHFGVAHKERLKQLKADVH 763

Query: 763  ALTLTATPIPRTLQLSMSGIRELSVIETAPPERKPVATALIERDDAALKSILEREIAREG 822
             LTLTATPIPRTLQ+++SG++E+SVI T P +R  V T ++  D   L+  + RE  R G
Sbjct: 764  VLTLTATPIPRTLQMALSGVKEMSVIATPPIDRLAVRTFVLPYDPVVLRESILRERYRGG 823

Query: 823  QVFWVHNRVQGLERTTEYVRKLVPDARVGMAHGQMTERALEETMHRFWHGELDVLVCTAI 882
            QVF+V  R+  ++R  E + KLVP+ +  +AHG++    LEE M  F   + DVL+ T I
Sbjct: 824  QVFYVCPRLADIDRVAERLAKLVPEVKTAVAHGRLAPADLEEVMVAFGEKQYDVLLSTNI 883

Query: 883  VESGLDFPRANTLIVDQAQMFGLGQLYQLRGRVGRSDRQAYAIFVVPDADNLSDIARERM 942
            +ESG+D P  NTLI+ +A MFGLGQLYQLRGRVGR   + YA F +P+   LS  A +R+
Sbjct: 884  IESGIDMPSVNTLIIHRADMFGLGQLYQLRGRVGRGKTRGYAYFTLPNDKVLSKAAEKRL 943

Query: 943  RVILDMDYLGAGFQVAMEDLRIRGAGNILGEAQSGHMTRVGLELFLEMLEEAVTRLKGDP 1002
            +V+  +D LGAGFQ+A  DL IRGAGN+LGE QSGH+  VG+EL+ ++LEEAV   KG  
Sbjct: 944  QVMQALDTLGAGFQLASHDLDIRGAGNLLGEEQSGHIREVGVELYQQLLEEAVAAAKGGQ 1003

Query: 1003 PRESVE---TELNIGIPAHIPEGYIEDARDRLRFYKALSSATDAAAQQDIEMEMRDRYGV 1059
              E+ E    ++ +G P  IPE Y+ D   RL  Y+ + S  D A  + +  E+ DR+G 
Sbjct: 1004 GGEAAEEWSPQIAVGTPVLIPETYVADLSVRLSLYRRIGSLADQAEIEALAAELIDRFGK 1063

Query: 1060 FPPELETFLALLVLKRQLRRMQVQRADIYPDKVRLVWDERQTAVDIGRLIEWVGQHADRA 1119
             PPE+E  L ++ +K   +   + + D  P K  +V        +   L++++ + A   
Sbjct: 1064 LPPEVENLLEVVAIKALCKLAGIDKVDSGP-KGAVVSLRGNVFANPAALVQFIARSAGSC 1122

Query: 1120 RLQP 1123
            +++P
Sbjct: 1123 KIRP 1126