Pairwise Alignments

Query, 316 a.a., dnaJ protein, putative (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 319 a.a., Curved DNA-binding protein from Pseudomonas putida KT2440

 Score =  268 bits (686), Expect = 1e-76
 Identities = 154/327 (47%), Positives = 206/327 (62%), Gaps = 29/327 (8%)

Query: 3   VEFKDYYKLLGVSRTASRDEIAKAYKKLARKYHPDLNPGDKKAEESFKEINEAYEVLKDD 62
           ++FKDYYK+LGV  TA    I  AY+KLARKYHPD++  ++ AEE FKE NEAYEVL D 
Sbjct: 1   MDFKDYYKILGVEPTADEKAIKAAYRKLARKYHPDVSK-ERDAEEKFKEANEAYEVLGDA 59

Query: 63  EKRKLYDQLGP-NWQHGQNFQGAPDFENVRFDFGGGQGFGGAGFSDFFETLFGGAGAGRR 121
           +KR  +D++     QHG+ FQ  P +E+     GGG GF G  FSDFF ++FGG  AG  
Sbjct: 60  QKRAEFDEIRKYGGQHGRPFQAPPGWESR----GGGGGFEGGDFSDFFSSIFGGRSAGG- 114

Query: 122 GGGGFGPDPFGGFSGRQR----KGRDVEAEIALTLEEVHGGGRRAITLQ-------GQ-T 169
                  +PFGG   +QR    +G+DVE E+A+ LEE      + I+ Q       GQ T
Sbjct: 115 -------NPFGGARQQQRSAGRRGQDVELELAVFLEETLSKESKQISFQVPQTNAMGQRT 167

Query: 170 G--PRTLEVNIPAGVRDGARIRLAGQGDPGMGGAPAGDLYLKVRLAQHPLFAVEESNLVY 227
           G   +TL V IPAGV DG RIRL GQG PG GG   GDL+L +R+A HPLF VE  +L+ 
Sbjct: 168 GFTTKTLNVRIPAGVTDGERIRLKGQGAPGSGGGANGDLFLTIRMAPHPLFDVEGHDLII 227

Query: 228 DLPLAPWEATLGTTVRVPTLDGEVDIAVPPGTGSGRKLRLKGRGL-GPVGKRGDQFVRIV 286
            +PLAPWEA LG  V VPTLDG++++ + P + SG++LR+ G+GL    G+RG+ + ++ 
Sbjct: 228 TVPLAPWEAALGAKVAVPTLDGKINLTIRPDSQSGQRLRVPGKGLANKQGERGNLYAQLK 287

Query: 287 VRVPDTLTPRERELWETLARESSFRAR 313
           V +P       RELW  L+ +++F  R
Sbjct: 288 VVMPPASDESARELWTKLSEKAAFNPR 314