Pairwise Alignments

Query, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 615 a.a., RNA polymerase sigma factor, sigma-70 family from Kangiella aquimarina DSM 16071

 Score =  468 bits (1203), Expect = e-136
 Identities = 278/626 (44%), Positives = 380/626 (60%), Gaps = 49/626 (7%)

Query: 1   MSNIKEIQQIKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLDIAIVDSE 60
           MS   +  Q+K LIA+GK  G+LT+ EVN  LP ++  PEQIE+II + + + I + ++ 
Sbjct: 1   MSENSQQSQLKLLIARGKEQGYLTYAEVNDHLPPDIVDPEQIEDIIRMINDMGIQVYETT 60

Query: 61  KDGKKISMSPGE-SEEEAPSEGGLDLSDDEETVDYSSRSTDPVRMYLREMGSVPLLDRDG 119
            D  ++ M+    ++EEA  E    L+  +       R+TDPVRMY+REMGSV LL R+G
Sbjct: 61  PDADELLMNDESVTDEEAAEEAAAALASVDSEF---GRTTDPVRMYMREMGSVELLTREG 117

Query: 120 EVVIAKKIEMGEQDVLYALVEVPVAVEELVNVGEDLKQNRIKLKDVV------------- 166
           E+ IAK+IE G + VL A+   P  +  L+      +  +++L ++V             
Sbjct: 118 EIDIAKRIEEGIRQVLGAIANYPDTIRILLEEFALYEDEQVRLTEIVTGFTDGEEAEFVQ 177

Query: 167 ------------KTIEEDDPSEDEMNQRQRVILLL----EEIRTTFKKKRKVYSKLDECC 210
                       + ++ DD  +D+ +      +      EE    F + +K Y K     
Sbjct: 178 EESEAAQIANASEELDNDDDVDDDDDDEDETEVDTGPDPEEAAARFAELKKQYDKT---- 233

Query: 211 TLERRVASVQREIMNYKEDI--VSRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLSAY 268
                V +V++    +K  I  +  ++++ ++  L  R+ + +   +R+  +  R+   Y
Sbjct: 234 -----VKAVEKYGRTHKSAIKQLDAMKELFMQLRLAPRMFDLLVTNLREKMDGIREQERY 288

Query: 269 ILSTGKTQAEIQ-----ALFSGLEAREVSPVAASAALNMTVEELFSFKEMILGKIEILSR 323
           I+      A +      + FSG EA            +   E L    E IL     L  
Sbjct: 289 IMMLAVNGARMPRKTFISTFSGSEADPTWIEQHVKKKSKYSEPLAEHAEEILKAQRKLQL 348

Query: 324 LQDKCCHNVNDLEEVLWRIKRGNSIAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQ 383
           +++ C  +V +++E    +  G + A RAK+E++ +NLRLV+SIAKKYTNRGLQFLDLIQ
Sbjct: 349 IEESCSLSVMEIKEANREMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQ 408

Query: 384 EGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRT 443
           EGNIGLMKAVDKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R 
Sbjct: 409 EGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRI 468

Query: 444 SRYLVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDK 503
           SR ++QE+GR+P PEE+AERM+ P DK++KVLKIAKEPIS+ETPIGD+EDS LGDFIED 
Sbjct: 469 SRQMLQEMGREPQPEELAERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDT 528

Query: 504 KAVAPAEEVVNTKLGEQIASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRER 563
              +P +      L E    +LA LT RE +VLR RFGI   +DHTLEEVGK F+VTRER
Sbjct: 529 TIDSPVDAATGESLKEVTDEILAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRER 588

Query: 564 IRQIEAKALRKLRHPVRSQTLRSYYE 589
           IRQIEAKALRKLRHP RS+ LR+Y +
Sbjct: 589 IRQIEAKALRKLRHPSRSEKLRTYLD 614