Pairwise Alignments

Query, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 611 a.a., RNA polymerase sigma factor RpoD from Dickeya dianthicola 67-19

 Score =  457 bits (1177), Expect = e-133
 Identities = 267/608 (43%), Positives = 367/608 (60%), Gaps = 32/608 (5%)

Query: 9   QIKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLDIAIVDSEKDGKKISM 68
           Q+K L+ +GK  G+LT+ EVN  LP ++   +QIE+II + + + I +++   D   + +
Sbjct: 8   QLKLLVTRGKEQGYLTYAEVNDHLPEDIIDSDQIEDIIQMINDMGIQVMEEAPDADDLML 67

Query: 69  SPGESEEEAPSEGGLDLSDDEETVDYSSRSTDPVRMYLREMGSVPLLDRDGEVVIAKKIE 128
           +   ++E+A       LS  E  +    R+TDPVRMY+REMG+V LL R+GE+ IAK+IE
Sbjct: 68  AENTADEDAAEAAAQVLSSVESEI---GRTTDPVRMYMREMGTVELLTREGEIDIAKRIE 124

Query: 129 MGEQDVLYALVEVPVAVEELVNVGEDLKQNRIKLKDVVKTI------------------- 169
            G   V  ++ E P A+  L++  + ++    +L D++                      
Sbjct: 125 DGINQVQCSVAEYPEAITYLLDQYDRVEAGESRLSDLITAFVDPNAEEDLAPNTTPENAE 184

Query: 170 -------EEDDPSEDEMNQRQRVILLLEEI-RTTFKKKRKVYSKLDECCTLERRVASVQR 221
                  E+DD SE++ +       +  E+ R  F + R  Y           R      
Sbjct: 185 PADDGIDEDDDESEEDEDDTDDDNSIDPELARQKFAELRDQYEATRVSIKAHGRSHPTAI 244

Query: 222 EIMNYKEDIVSRLRDIKLEKTLIDRIIETVEDYVRQMHNCQRDLSAYILSTGKTQAEIQA 281
           + +N   ++  + R +  +  L+   +  + D VR        L   +    K       
Sbjct: 245 DEINKLSEVFKQFRLVPKQFDLLVNNMRAMMDRVRAQERQIMKLCVELCKMPKKN--FVT 302

Query: 282 LFSGLEAREVSPVAASAALNMTVEELFSFKEMILGKIEILSRLQDKCCHNVNDLEEVLWR 341
           LF+G E       AA +      E+L   ++ +   ++ L +++D+    +  ++++  R
Sbjct: 303 LFTGNETNRKWFDAALSMGKPWCEKLREVEDDVHRGLQKLQQIEDETGLTIEQVKDINRR 362

Query: 342 IKRGNSIAMRAKQELIRSNLRLVVSIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYQRG 401
           +  G + A RAK+E++ +NLRLV+SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEY+RG
Sbjct: 363 MSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRG 422

Query: 402 YKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRYLVQELGRDPTPEEIA 461
           YKFSTYATWWIRQAITR+IADQARTIRIPVHMIETINKL R SR ++QE+GR+PTPEE+A
Sbjct: 423 YKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELA 482

Query: 462 ERMDYPIDKVKKVLKIAKEPISLETPIGDEEDSSLGDFIEDKKAVAPAEEVVNTKLGEQI 521
           ERM  P DK++KVLKIAKEPIS+ETPIGD+EDS LGDFIED     P +   +  L    
Sbjct: 483 ERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATSESLRSAT 542

Query: 522 ASVLADLTPREEQVLRKRFGIGEKSDHTLEEVGKLFNVTRERIRQIEAKALRKLRHPVRS 581
             VLA LT RE +VLR RFGI   +DHTLEEVGK F+VTRERIRQIEAKALRKLRHP RS
Sbjct: 543 HDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRS 602

Query: 582 QTLRSYYE 589
           + LRS+ +
Sbjct: 603 EVLRSFLD 610