Pairwise Alignments

Query, 590 a.a., RNA polymerase sigma-70 factor (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 648 a.a., RNA polymerase sigma factor RpoD from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  469 bits (1208), Expect = e-136
 Identities = 278/640 (43%), Positives = 383/640 (59%), Gaps = 76/640 (11%)

Query: 10  IKSLIAKGKVSGFLTFDEVNKALPAEVNTPEQIEEIIGIFDQLDIAIVDSEKDGKK---- 65
           +K  I + K  G++T +E+NK LP+E  TP+ IE+ + +  ++ + +V++E+D ++    
Sbjct: 26  VKKFIKQAKARGYVTMEELNKVLPSEEVTPDAIEDTLAMLSEMGVNVVEAEEDAQEQQST 85

Query: 66  -ISMSPGESEEEAPSEGGLDLSDDEETVDYSSRSTDPVRMYLREMGSVPLLDRDGEVVIA 124
            ++ + G +  E P++   D +DD            PVRMYLREMGSV LL R+GE+ IA
Sbjct: 86  DVAAAAGTAVAETPAKSAYDRTDD------------PVRMYLREMGSVELLSREGEIAIA 133

Query: 125 KKIEMGEQDVLYALVEVPVAVEELVNVGEDLKQNRIKLKDVV------------------ 166
           K+IE G   ++  L E  +  E ++   ++L+ NRI L++V+                  
Sbjct: 134 KRIEAGRDAMISGLCESALTFEAIMVWRDELENNRILLREVIDLDATYGVLNPSSLPGAA 193

Query: 167 ------------KTIEEDDPSED------------------EMNQRQRVILLLEEIRTTF 196
                       K   ED P  D                  E   R  V+ +L  I   F
Sbjct: 194 QPEGEEEDEAEDKPAAEDKPESDDEDDDDFDDGGGMSISALEAELRDGVMDVLNAIAADF 253

Query: 197 KKKRKVYSKLDECCTLERRVASVQRE--IMNYKEDIVSRLRDIKLEKTLIDRIIETVEDY 254
              R +  KL +   L+  V S + E         I  RL+ +KL    I+ ++E +   
Sbjct: 254 GAFRALQDKLVQA-RLKGEVLSAKDEKAYQALTTSISDRLKTMKLNNNRIEALVEQLYAI 312

Query: 255 VRQMHNCQRDLSAYILSTGKTQAEIQALFSGLEAREVSPVAASAALNMTVEELFSFKEMI 314
            +++   +  L     S G ++ E    + G    E+ P       +  V     F E  
Sbjct: 313 NKRLIGLEGRLLRLADSYGISRPEFLKAYFG---SELDPTWTDRIKDQGVRWT-KFSENE 368

Query: 315 LGKIEIL----SRLQDKCCHNVNDLEEVLWRIKRGNSIAMRAKQELIRSNLRLVVSIAKK 370
             +I  +    + +  +    ++D   ++  +++G   A +AK+E++ +NLRLV+SIAKK
Sbjct: 369 ASQIATIRSDVAAVALEAGLPIDDYRRIVQTVQKGEREARQAKKEMVEANLRLVISIAKK 428

Query: 371 YTNRGLQFLDLIQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIP 430
           YTNRGLQFLDLIQEGNIGLMKAVDKFEY+RGYKFSTYATWWIRQAITR+IADQARTIRIP
Sbjct: 429 YTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIP 488

Query: 431 VHMIETINKLIRTSRYLVQELGRDPTPEEIAERMDYPIDKVKKVLKIAKEPISLETPIGD 490
           VHMIETINK++RTSR ++ E+GR+PTPEE+AE++  P++KV+KVLKIAKEPISLETPIGD
Sbjct: 489 VHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLETPIGD 548

Query: 491 EEDSSLGDFIEDKKAVAPAEEVVNTKLGEQIASVLADLTPREEQVLRKRFGIGEKSDHTL 550
           EEDS LGDFIEDK AV P +  + + L E    VLA LTPREE+VLR RFGIG  +DHTL
Sbjct: 549 EEDSHLGDFIEDKNAVLPIDAAIQSNLRETTTRVLASLTPREERVLRMRFGIGMNTDHTL 608

Query: 551 EEVGKLFNVTRERIRQIEAKALRKLRHPVRSQTLRSYYES 590
           EEVG+ F+VTRERIRQIEAKALRKL+HP RS+ LRS+ +S
Sbjct: 609 EEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS 648