Pairwise Alignments

Query, 905 a.a., DNA mismatch repair protein MutS (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 867 a.a., DNA mismatch repair protein MutS from Rhodanobacter sp. FW510-T8

 Score =  612 bits (1578), Expect = e-179
 Identities = 378/893 (42%), Positives = 506/893 (56%), Gaps = 39/893 (4%)

Query: 14  QYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNAELKAPMCGVPYHA 73
           QYL  K  +PD LLF+RMGDFYELF+DDA   AR L I LT R  +  +  PM GVPYHA
Sbjct: 3   QYLSAKAAHPDVLLFFRMGDFYELFYDDARKAARLLDITLTQRGQSGGVPIPMAGVPYHA 62

Query: 74  VEGYISQLLDKGYRVAICEQIEDPKEAKGLVKRAVTRVLTPGTVIDDANLDAKEHNYLGA 133
            E Y+++L+  G  VAICEQ+ DP  AKG+V+R V RV+TPGTV D A L+ +  N L A
Sbjct: 63  AENYLARLVRLGESVAICEQMGDPALAKGIVERKVVRVVTPGTVTDAALLEERRDNLLLA 122

Query: 134 LFWNQDAEAGAFAWVDVSTGEWSGLYSRKLAELWQWAQKMAPRELLLPEGVDTPAMATLG 193
           +        G  AWVD+S+G +          L     ++ P E L+PE V  P + +  
Sbjct: 123 IAAGAHGSYG-LAWVDLSSGRFLLSEVPNAEALAAELARLQPAETLIPEDVAWPKLVSAL 181

Query: 194 TTQTVRVPARSHFDLKSGTERVMRAQGVADLGSLGLEGKPELVRACAALLAYLAQTQKQE 253
                R P   HFD  + T  + R  G  DLG  G++  P  V A   LL Y+ +TQK  
Sbjct: 182 PGLRKRPPW--HFDGDAATRELNRFFGTRDLGGFGVDKLPLAVAAAGCLLGYVEETQKSA 239

Query: 254 LSHLAPFKPLNLGRHLIIDEVTERNLELFHRLDGRKGPGTLWHILDRTLTPMGGRLLEER 313
           L HL      +    + +D  T RNLEL     GR    TL  +LD T+TPMG RLL   
Sbjct: 240 LPHLTGMAVESASETIALDAATRRNLELDIHPSGRT-EHTLLGVLDETVTPMGARLLRRW 298

Query: 314 MHHPWREASPIRETQQVVEWLFQDDVRREALRTALDLVYDLERLSTRIFLNRATPKDFIA 373
           +  P R    +R+  Q +  L  D  R ++LR  L  + DLER+  R+ L  A P+D   
Sbjct: 299 LTRPLRSRELLRQRHQAIGTLI-DSRRYDSLREQLRGIGDLERILARVALRSARPRDLST 357

Query: 374 LRQSLSALPAV-RATLERPANPEGTYPTDAETSGDTLPKPLSDMLSAW----DDLADYAD 428
           LR  L A P + RA +    N E      A   G TL + LS +L +      D  D AD
Sbjct: 358 LRDGLLAAPELTRALVPDRENQE------AAIHGRTLQQELSPLLGSLVERIGDHVDSAD 411

Query: 429 LLRRALTDNPPHLVTEGGLFRPGFDPDLDELLDLAEHGEARLQELLAEEQTVSGLPKLKL 488
           LL RA+ + PP L  +GG+   G+D +LDEL  L+ H +  L EL   E+  SG+  LK+
Sbjct: 412 LLARAIVEQPPVLQRDGGVIADGYDAELDELRRLSTHADQYLVELEEREKAASGITTLKI 471

Query: 489 GYNRVFGYFFELSRAGADSVPEHFVRRQTLANAERFTTERLKELEEKLVSATDRRKTLEY 548
           GYNRV GY+ E++RA +D  P H+ RRQT  NAER+ TE LK  E+K++SA +R    E 
Sbjct: 472 GYNRVHGYYIEITRAQSDKAPAHYTRRQTTKNAERYITEELKAFEDKVLSAKERSLMRER 531

Query: 549 RLFQSLRDTVAEARPRVLFMADMLAHLDFWQSLADVARRNGWVRPDVHTGHDIVIREGRH 608
            L+++L DT+ E    +   A  +A LD   +LA+ A    W  P +     I I  GRH
Sbjct: 532 ALYEALLDTLTEKLEPLKTAAAAMAELDVLSTLAERAEALDWSAPQLTDEPGIAIERGRH 591

Query: 609 PVVEAMQGSASFVPNDLRMDEKRRLLLITGPNMAGKSTVLRQTAIICLLAQMGAFVPARE 668
           PVVE ++    F PNDL++D+ RR+L+ITGPNM GKST +RQ A+I LLA +G++VPA  
Sbjct: 592 PVVEKVR-DEPFEPNDLKLDDTRRMLVITGPNMGGKSTYMRQNALIVLLAHIGSYVPAAS 650

Query: 669 ASIGIADRIFSRVGASDNLAQGQSTFMVEMMETARILRQASKRSLVILDEIGRGTSTFDG 728
           A IG  DRIF+R+GA D+L++GQSTFMVEM ETA IL  AS  SLV++DE+GRGTST+DG
Sbjct: 651 AVIGPIDRIFTRIGAGDDLSRGQSTFMVEMSETANILHNASADSLVLMDEVGRGTSTYDG 710

Query: 729 MALAWAVVEELTRRAGGGIRTLFATHYHEITSLEGRIPGVHNMNIAIREWNG-----DIV 783
           +ALA A    L R +     TLFATHY E+T L    P + N+++   E++       +V
Sbjct: 711 LALARAAAVHLARHSRA--YTLFATHYFELTELASEFPAIANVHLDAVEFHDQKRGEQLV 768

Query: 784 FLRRLVPGPADKSYGIEVARLAGVPHSVVQRARELLADLERTRDAARGTNSAPSRQTLPG 843
           F+  +  GPA++S+G++VA LAG+P SV+  A+  LA+LER      G   AP+  T P 
Sbjct: 769 FMHAVKEGPANRSFGLQVAALAGLPKSVIADAKRTLAELERGMHQHAGA-YAPAADTSPQ 827

Query: 844 LDLPSKQEQVDTIVAPPPCSGVEHPLLVALRDIDTDDMTPLEALKRITEWKQL 896
           L L            P   S  E     AL +ID D +TP EAL+ +   K+L
Sbjct: 828 LGL----------FTPAQPSAAER----ALEEIDPDALTPREALEVLYRLKRL 866