Pairwise Alignments

Query, 905 a.a., DNA mismatch repair protein MutS (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 855 a.a., DNA mismatch repair protein MutS from Pseudomonas sp. S08-1

 Score =  603 bits (1556), Expect = e-176
 Identities = 366/886 (41%), Positives = 512/886 (57%), Gaps = 41/886 (4%)

Query: 9   TPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNAELKAPMCG 68
           TPM +QY ++K  +PD L+FYRMGDFYELF++DA+  A  L I LT R  +A    PM G
Sbjct: 8   TPMMQQYWKLKNQHPDMLMFYRMGDFYELFYEDAKKAAALLDITLTARGQSAGQAIPMAG 67

Query: 69  VPYHAVEGYISQLLDKGYRVAICEQIEDPKEAKGLVKRAVTRVLTPGTVIDDANLDAKEH 128
           +P+H+ EGY+++L+  G  VAICEQI DP  +KG V+R V R++TPGT+ D+A LD +  
Sbjct: 68  IPFHSAEGYLARLVKFGEAVAICEQIGDPATSKGPVERQVVRIITPGTISDEAFLDERRD 127

Query: 129 NYLGALFWNQDAEAGAFAWVDVSTGEWSGLYSRKLAELWQWAQKMAPRELLLPEGVDTPA 188
           N +GA+    D +    A +D+++G +S    +    L    ++++P ELL+P+  D P 
Sbjct: 128 NLVGAILG--DEKLFGLAVLDITSGRFSVQEMKGWENLLAELERLSPAELLIPD--DWPQ 183

Query: 189 MATLGTTQTVRVPARSHFDLKSGTERVMRAQGVADLGSLGLEGKPELVRACAALLAYLAQ 248
              +   + VR  A   F+  S  + + +  GV DL   G EG    + A   LL Y  +
Sbjct: 184 GLPIEKRRGVRRRAPWDFERDSARKSLCQQFGVQDLKGFGCEGLTLAIGAAGCLLVYAKE 243

Query: 249 TQKQELSHLAPFKPLNLGRHLIIDEVTERNLELFHRLDGRKGPGTLWHILDRTLTPMGGR 308
           TQ+  L HL   +   L   +I+D  + RNLEL   L G +   TL  ++DR  T MG R
Sbjct: 244 TQRTALPHLRNLRHERLDDTVILDGASRRNLELDTNLAGGRD-NTLQSVVDRCQTAMGSR 302

Query: 309 LLEERMHHPWREASPIRETQQVVEWLFQDDVRREALRTALDLVYDLERLSTRIFLNRATP 368
           LL   ++ P R+ + +   Q+ +  L  D  R E L+  L  + D+ER+  RI L  A P
Sbjct: 303 LLTRWLNRPLRDRNVLEARQEAIACLL-DRYRFELLQPQLKDIGDVERILARIGLRNARP 361

Query: 369 KDFIALRQSLSALPAVRATLERPANPEGTYPTDAETSGDTLPKPLSDMLSAWDDLADYAD 428
           +D   LR +L+ALP +++ L   A  +  +  +   +  T P              + AD
Sbjct: 362 RDLARLRDALAALPQLQSAL---AELDAPHLAELAVNIRTYP--------------ELAD 404

Query: 429 LLRRALTDNPPHLVTEGGLFRPGFDPDLDELLDLAEHGEARLQELLAEEQTVSGLPKLKL 488
           LL RA+ DNPP ++ +GG+ + G+D +LDEL  ++E+    L +L A E+  +GL  LK+
Sbjct: 405 LLARAIIDNPPAVIRDGGVLKTGYDAELDELQSISENAGQYLMDLEAREKERTGLANLKV 464

Query: 489 GYNRVFGYFFELSRAGADSVPEHFVRRQTLANAERFTTERLKELEEKLVSATDRRKTLEY 548
           GYNRV GYF EL    A+S P  ++RRQTL  AERF T  LK  E+K +SA  R    E 
Sbjct: 465 GYNRVHGYFIELPSKQAESAPADYIRRQTLKGAERFITPELKTFEDKALSAKSRALAREK 524

Query: 549 RLFQSLRDTVAEARPRVLFMADMLAHLDFWQSLADVARRNGWVRPDVHTGHDIVIREGRH 608
           +L++ L + +      +   A  LA LD   +LA+ A      RP       + I +GRH
Sbjct: 525 QLYEELLELLIAQLAPLQDTAGALAELDVLANLAERALNLDLNRPRFVDEPCMRIDQGRH 584

Query: 609 PVVEAMQGSASFVPNDLRMDEKRRLLLITGPNMAGKSTVLRQTAIICLLAQMGAFVPARE 668
           PVVE +     FV NDL +D+  R+L+ITGPNM GKST +RQTA+I LLA +G+FVPA  
Sbjct: 585 PVVEQVL-ETPFVANDLGLDDGTRMLIITGPNMGGKSTYMRQTALIVLLAHIGSFVPAAA 643

Query: 669 ASIGIADRIFSRVGASDNLAQGQSTFMVEMMETARILRQASKRSLVILDEIGRGTSTFDG 728
             + + DRIF+R+G+SD+LA G+STFMVEM ETA IL  A+ RSLV++DE+GRGTSTFDG
Sbjct: 644 CELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATDRSLVLMDEVGRGTSTFDG 703

Query: 729 MALAWAVVEELTRRAGGGIRTLFATHYHEITSLEGRIPGVHNMNIAIREWNGDIVFLRRL 788
           ++LAW+  E L +       TLFATHY E+T L    P V N+++   E N  IVFL  +
Sbjct: 704 LSLAWSAAEHLAKLRAW---TLFATHYFELTVLPESEPVVANVHLNATEHNERIVFLHHV 760

Query: 789 VPGPADKSYGIEVARLAGVPHSVVQRARELLADLERTRDAARGTNSAPSRQTLPGLDLPS 848
           +PGPA +SYG+ VA+LAGVP  V+QRAR+ LA LE T        S P +   PG  L  
Sbjct: 761 LPGPASQSYGLAVAQLAGVPGPVIQRARQHLARLETTSLPHELPRSEPGQ---PGAPL-- 815

Query: 849 KQEQVDTIVAPPPCSGVEHPLLVALRDIDTDDMTPLEALKRITEWK 894
              Q D   A P      HP+L  L  I+ DD+TP  AL+ I  WK
Sbjct: 816 ---QSDMFAALP------HPVLEELGKINPDDLTPRRALELIYTWK 852