Pairwise Alignments

Query, 905 a.a., DNA mismatch repair protein MutS (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 859 a.a., DNA mismatch repair protein MutS from Pseudomonas sp. RS175

 Score =  593 bits (1529), Expect = e-173
 Identities = 357/879 (40%), Positives = 498/879 (56%), Gaps = 41/879 (4%)

Query: 9   TPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNAELKAPMCG 68
           TPM +QY R+K  +PD L+FYRMGDFYE+F++DA+  A+ L I LT R  +A +  PMCG
Sbjct: 12  TPMMQQYWRLKNQHPDQLMFYRMGDFYEIFYEDAKKAAKLLDITLTARGQSAGMAIPMCG 71

Query: 69  VPYHAVEGYISQLLDKGYRVAICEQIEDPKEAKGLVKRAVTRVLTPGTVIDDANLDAKEH 128
           +PYHA EGY+++L+  G  V ICEQ+ DP  +KG V+R V R++TPGTV D+A LD +  
Sbjct: 72  IPYHAAEGYLAKLVKLGESVVICEQVGDPATSKGPVERQVVRIITPGTVSDEALLDERRD 131

Query: 129 NYLGALFWNQDAEAGAFAWVDVSTGEWSGLYSRKLAELWQWAQKMAPRELLLPEGVDTPA 188
           N + A+    D      A +D+++G +S L  +    L    +++ P ELL+P+  D P 
Sbjct: 132 NLIAAVLG--DERLFGLAVLDITSGNFSVLEIKGWENLLAELERVNPVELLIPD--DWPK 187

Query: 189 MATLGTTQTVRVPARSHFDLKSGTERVMRAQGVADLGSLGLEGKPELVRACAALLAYLAQ 248
                  + VR  A   F+  S  + + +     DL   G E     + A   LLAY  +
Sbjct: 188 DLPAEKRRGVRRRAPWDFERDSALKSLCQQFATQDLKGFGCENLTLAIGAAGCLLAYAKE 247

Query: 249 TQKQELSHLAPFKPLNLGRHLIIDEVTERNLELFHRLDGRKGPGTLWHILDRTLTPMGGR 308
           TQ+  L HL   +   L   +++D  + RNLEL   L G +   TL  ++DR  T MG R
Sbjct: 248 TQRTALPHLRSLRHERLDDTVVLDGASRRNLELDTNLAGGRD-NTLQSVVDRCQTAMGSR 306

Query: 309 LLEERMHHPWREASPIRETQQVVEWLFQDDVRREALRTALDLVYDLERLSTRIFLNRATP 368
           LL   ++ P R+ + +   Q  +  L  D  R E L+  L  + D+ER+  RI L  A P
Sbjct: 307 LLTRWLNRPLRDLTVLLARQTSITCLL-DRYRFEQLQPQLKEIGDIERILARIGLRNARP 365

Query: 369 KDFIALRQSLSALPAVRATLERPANPEGTYPTDAETSGDTLPKPLSDMLSAWDDLADYAD 428
           +D   LR +L  LP ++A +           TD E         L  +        + A 
Sbjct: 366 RDLARLRDALGVLPELQAAM-----------TDLEAPH------LQHLARNTSTYPELAA 408

Query: 429 LLRRALTDNPPHLVTEGGLFRPGFDPDLDELLDLAEHGEARLQELLAEEQTVSGLPKLKL 488
           LL +A+ DNPP ++ +GG+ + G+D +LDEL  L+E+    L +L A E+  +GL  LK+
Sbjct: 409 LLEKAIIDNPPAVIRDGGVLKTGYDAELDELQALSENAGQFLIDLEAREKARTGLTNLKV 468

Query: 489 GYNRVFGYFFELSRAGADSVPEHFVRRQTLANAERFTTERLKELEEKLVSATDRRKTLEY 548
           GYNR+ GYF EL    A+  P  ++RRQTL  AERF T  LK  E+K +SA  R    E 
Sbjct: 469 GYNRIHGYFIELPSKQAEQAPADYIRRQTLKGAERFITPELKAFEDKALSAKSRALAREK 528

Query: 549 RLFQSLRDTVAEARPRVLFMADMLAHLDFWQSLADVARRNGWVRPDVHTGHDIVIREGRH 608
            L+ +L + +    P +   A  LA LD   +LA+ A       P   +   + I +GRH
Sbjct: 529 MLYDALLEDLISQLPPLQDTAAALAELDVLSNLAERALNLDLNCPRFVSEPCMRISQGRH 588

Query: 609 PVVEAMQGSASFVPNDLRMDEKRRLLLITGPNMAGKSTVLRQTAIICLLAQMGAFVPARE 668
           PVVE +  +  FV NDL +D+  R+L+ITGPNM GKST +RQTA+I LLA +G+FVPA  
Sbjct: 589 PVVEQVL-TTPFVANDLSLDDNTRMLVITGPNMGGKSTYMRQTALIVLLAHIGSFVPAAS 647

Query: 669 ASIGIADRIFSRVGASDNLAQGQSTFMVEMMETARILRQASKRSLVILDEIGRGTSTFDG 728
             + + DRIF+R+G+SD+LA G+STFMVEM ETA IL  A++RSLV++DE+GRGTSTFDG
Sbjct: 648 CELSLVDRIFTRIGSSDDLAGGRSTFMVEMSETANILHNATERSLVLMDEVGRGTSTFDG 707

Query: 729 MALAWAVVEELTRRAGGGIRTLFATHYHEITSLEGRIPGVHNMNIAIREWNGDIVFLRRL 788
           ++LAWA  E L +       TLFATHY E+T L    P V N+++   E N  IVFL  +
Sbjct: 708 LSLAWAAAERLAQLRA---YTLFATHYFELTVLPESQPLVANVHLNATEHNDRIVFLHHV 764

Query: 789 VPGPADKSYGIEVARLAGVPHSVVQRARELLADLERTRDAARGTNSAPSRQTLPGLDLPS 848
           +PGPA +SYG+ VA+LAGVP  V+ RARE L+ LE        T S P     P    P+
Sbjct: 765 LPGPASQSYGLAVAQLAGVPGDVISRAREHLSRLE--------TTSLPHEAPRPAKGKPA 816

Query: 849 KQEQVDTIVAPPPCSGVEHPLLVALRDIDTDDMTPLEAL 887
             +Q D   + P      HP+L  L  +D DD TP  AL
Sbjct: 817 APQQSDLFASLP------HPVLDELAKLDLDDFTPRRAL 849