Pairwise Alignments

Query, 905 a.a., DNA mismatch repair protein MutS (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 855 a.a., DNA mismatch repair protein MutS from Escherichia fergusonii Becca

 Score =  569 bits (1467), Expect = e-166
 Identities = 345/888 (38%), Positives = 503/888 (56%), Gaps = 46/888 (5%)

Query: 9   TPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNAELKAPMCG 68
           TPM +QYL++K  +P+ LLFYRMGDFYELF+DDA+  ++ L I+LT R  +A    PM G
Sbjct: 13  TPMMQQYLKLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMAG 72

Query: 69  VPYHAVEGYISQLLDKGYRVAICEQIEDPKEAKGLVKRAVTRVLTPGTVIDDANLDAKEH 128
           +PYHAVE Y+++L+++G  VAICEQI DP  +KG V+R V R++TPGT+ D+A L  ++ 
Sbjct: 73  IPYHAVENYLAKLVNQGESVAICEQIGDPATSKGPVERKVVRIVTPGTISDEALLQERQD 132

Query: 129 NYLGALFWNQDAEAGAFAWVDVSTGEWSGLYSRKLAELWQWAQKMAPRELLLPEGVDTPA 188
           N L A++  QD++   +A +D+S+G +          +    Q+  P ELL  E  D   
Sbjct: 133 NLLAAIW--QDSKGFGYATLDISSGRFRLSEPADRETMAAELQRTNPAELLYAE--DFAE 188

Query: 189 MATLGTTQTVRVPARSHFDLKSGTERVMRAQGVADLGSLGLEGKPELVRACAALLAYLAQ 248
           M+ +   + +R      F++ +  +++    G  DL   G+E  P  + A   LL Y   
Sbjct: 189 MSLIEGRRGLRRRPLWEFEIDTARQQLNLQFGTRDLVGFGVENAPRGLCAAGCLLQYAKD 248

Query: 249 TQKQELSHLAPFKPLNLGRHLIIDEVTERNLELFHRLDGRKGPGTLWHILDRTLTPMGGR 308
           TQ+  L H+           +I+D  T RNLE+   L G     TL  +LD T+TPMG R
Sbjct: 249 TQRTTLPHIRSITMERQQDSIIMDAATRRNLEITQNLAGG-AENTLASVLDCTVTPMGSR 307

Query: 309 LLEERMHHPWREASPIRETQQVVEWLFQDDVRREALRTALDLVYDLERLSTRIFLNRATP 368
           +L+  +H P R+   + E QQ +  L   D   E L+  L  V DLER+  R+ L  A P
Sbjct: 308 MLKRWLHMPVRDTRVLLERQQTIGAL--QDFTAE-LQPVLRQVGDLERILARLALRTARP 364

Query: 369 KDFIALRQSLSALPAVRATLERPANPEGTYPTDAETSGDTLPKPLSDMLSAWDDLADYAD 428
           +D   +R +   LP +RA LE   +                  P+  +     + A+  D
Sbjct: 365 RDLARMRHAFQQLPELRAQLENVDSA-----------------PVQALREKMGEFAELRD 407

Query: 429 LLRRALTDNPPHLVTEGGLFRPGFDPDLDELLDLAEHGEARLQELLAEEQTVSGLPKLKL 488
           LL RA+ D PP LV +GG+   G++ +LDE   LA+     L+ L   E+  +GL  LK+
Sbjct: 408 LLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERTGLDTLKV 467

Query: 489 GYNRVFGYFFELSRAGADSVPEHFVRRQTLANAERFTTERLKELEEKLVSATDRRKTLEY 548
           G+N V GY+ ++SR  +   P +++RRQTL NAER+    LKE E+K++++  +   LE 
Sbjct: 468 GFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEK 527

Query: 549 RLFQSLRDTVAEARPRVLFMADMLAHLDFWQSLADVARRNGWVRPDVHTGHDIVIREGRH 608
           +L++ L D +      +   A  LA LD   +LA+ A    +  P       I I EGRH
Sbjct: 528 QLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKPGIRITEGRH 587

Query: 609 PVVEAMQGSASFVPNDLRMDEKRRLLLITGPNMAGKSTVLRQTAIICLLAQMGAFVPARE 668
           PVVE +     F+ N L +  +RR+L+ITGPNM GKST +RQTA+I L+A +G++VPA++
Sbjct: 588 PVVEQVLNEP-FIANPLNLSPQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQK 646

Query: 669 ASIGIADRIFSRVGASDNLAQGQSTFMVEMMETARILRQASKRSLVILDEIGRGTSTFDG 728
             IG  DRIF+RVGA+D+LA G+STFMVEM ETA IL  A++ SLV++DEIGRGTST+DG
Sbjct: 647 VEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDEIGRGTSTYDG 706

Query: 729 MALAWAVVEELTRRAGGGIRTLFATHYHEITSLEGRIPGVHNMNIAIREWNGDIVFLRRL 788
           ++LAWA  E L  +      TLFATHY E+T L  ++ GV N+++   E    I F+  +
Sbjct: 707 LSLAWACAENLANKIKA--LTLFATHYFELTQLPEKMEGVANVHLDALEHGDTIAFMHSV 764

Query: 789 VPGPADKSYGIEVARLAGVPHSVVQRARELLADLERTRDAARGTNSAPSRQTLPGLDLPS 848
             G A KSYG+ VA LAGVP  V++RAR+ L +LE     A  T    ++ +L  L +P 
Sbjct: 765 QDGAASKSYGLAVAALAGVPKEVIKRARQKLRELESISPNAAATQVDGTQMSL--LSVPE 822

Query: 849 KQEQVDTIVAPPPCSGVEHPLLVALRDIDTDDMTPLEALKRITEWKQL 896
           +                  P + AL ++D D +TP +AL+ I   K L
Sbjct: 823 ETS----------------PAVEALENLDPDSLTPRQALEWIYRLKSL 854