Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 697 a.a., excinuclease ABC subunit UvrB from Paraburkholderia sabiae LMG 24235

 Score =  748 bits (1931), Expect = 0.0
 Identities = 374/672 (55%), Positives = 492/672 (73%), Gaps = 10/672 (1%)

Query: 6   FRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILA 65
           FRL+  + P GDQP AI  +V  +  G+  Q LLGVTGSGKT+T+AN IA   RPA++ A
Sbjct: 26  FRLYQPYPPAGDQPTAIETLVEGVEDGLSFQTLLGVTGSGKTYTMANTIARLGRPAIVFA 85

Query: 66  PNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 125
           PNKTLAAQLY EFR  FP NAVEYFVSYYDYYQPEAYVP  D +IEKDSSIN++I+++R 
Sbjct: 86  PNKTLAAQLYAEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMRL 145

Query: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQRN 185
           +AT +L+ RRDVVIVA+VS IYG+G+P  Y ++++ +  G +     ++ RL+ +QY RN
Sbjct: 146 SATKSLMERRDVVIVATVSAIYGIGNPSEYHQMILTLRTGDKLGQRDVIARLIAMQYNRN 205

Query: 186 DFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTVIY 245
           + DF RG+FRVRGD +++ PA H E A+R+E F D+ID +   DPLTG V   + +  +Y
Sbjct: 206 EADFQRGSFRVRGDTIDIFPAEHAEMAVRVELFDDEIDTLQLFDPLTGRVRQKIPRFTVY 265

Query: 246 PASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYCN 305
           P+SHYV+ R+ ++RA+  I+ EL +RL  + +  +LVEAQRLEQRT  DLEM++ELG+C 
Sbjct: 266 PSSHYVTPRETVMRAVETIKSELRDRLEFFYNDGKLVEAQRLEQRTRFDLEMLQELGFCK 325

Query: 306 GIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVDF 365
           GIENYSRH  G A G+PP  L+DY P D ++F+DESH+ + Q+  MY GDR+RK  LVD+
Sbjct: 326 GIENYSRHFSGAAPGEPPPTLVDYLPTDAMMFLDESHVLIGQLNGMYNGDRARKENLVDY 385

Query: 366 GFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVVE 425
           GFRLPSALDNRPL+F EF  ++ Q V+VSATP  +E  ++ G +AEQ++RPTGLVDP + 
Sbjct: 386 GFRLPSALDNRPLKFNEFERKMRQVVFVSATPADYE-KKTAGQVAEQVVRPTGLVDPEIA 444

Query: 426 VRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDTME 485
           VRP R QVDD+LAE   R A  +RVL+T LTKRMAE LTE L + G+ VRYLHSDIDT+E
Sbjct: 445 VRPARTQVDDVLAEINERVAAGDRVLVTVLTKRMAEQLTEFLADHGVKVRYLHSDIDTVE 504

Query: 486 RMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRAAR 545
           R+ II+ LR G  DVLVGINLLREGLDIPEVSLV+ILDADKEGFLR+  SLIQT GRAAR
Sbjct: 505 RVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAAR 564

Query: 546 NAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYSAA 605
           N  G+ ILYAD +T SM+ A+DET RRR +Q A+NE  GI PR + K +    D +Y+  
Sbjct: 565 NVNGKAILYADKITDSMKRAIDETERRRAKQMAFNEERGIVPRGVVKRIKDIIDGVYNV- 623

Query: 606 SEGGKGKGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFERAATLRD 665
               + +   + +Q     E+++E     + +AK +++LE++M E AK LEFE+AA +RD
Sbjct: 624 ---DEARAELKEQQVRAKFEDMSE-----KQLAKELKRLEKQMMEHAKNLEFEKAAQMRD 675

Query: 666 RIRLLRERLIEA 677
           ++ LLR+R+  A
Sbjct: 676 QLALLRQRVFGA 687