Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 662 a.a., Excinuclease ABC subunit B from Kangiella aquimarina DSM 16071

 Score =  756 bits (1951), Expect = 0.0
 Identities = 385/668 (57%), Positives = 488/668 (73%), Gaps = 16/668 (2%)

Query: 6   FRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILA 65
           F + + F P GDQP+AI Q++  L  G+  Q LLGVTGSGKT+T+ANVIA   RPA+I+A
Sbjct: 5   FDIQSPFPPAGDQPKAIKQLLEGLEDGLSHQTLLGVTGSGKTYTMANVIAQSGRPAIIMA 64

Query: 66  PNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 125
           PNKTLAAQLY E +  FP+NAVEYFVSYYDYYQPEAYV ASDT+IEKDSSIN++I+++R 
Sbjct: 65  PNKTLAAQLYGEMKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIEKDSSINEHIEQMRL 124

Query: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQRN 185
           +AT ALL RRD +IVASVS IYGLG P+ +  +V+ ++ G       ++ RL E+QY RN
Sbjct: 125 SATRALLERRDTIIVASVSAIYGLGDPKAFHSMVMHLKVGDAVDQRFILRRLAELQYTRN 184

Query: 186 DFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTVIY 245
           +FD  R T+RVRGD++++ PA   + A+RIE F D+++ I   DPLTGEVL  + +  ++
Sbjct: 185 EFDLQRATYRVRGDLIDIYPAESEKHAIRIELFDDEVETIQTFDPLTGEVLKRLTRVTVF 244

Query: 246 PASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYCN 305
           P SHYV+ R  ++ A+  I+ +L ERL ++   N+LVEAQRLEQR   D+EMM+ELGYC+
Sbjct: 245 PKSHYVTSRQTILDAIEQIKVDLKERLAQFYEQNKLVEAQRLEQRVKFDIEMMQELGYCS 304

Query: 306 GIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVDF 365
           GIENYSR+L G   G+PP CLLDY P D L+ +DESH+TV Q+GAMYKGDRSRK TLV++
Sbjct: 305 GIENYSRYLSGAQPGEPPPCLLDYLPPDALMIIDESHVTVSQIGAMYKGDRSRKETLVNY 364

Query: 366 GFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVVE 425
           GFRLP+ALDNRPL F EF     QTV+VSATPGK+E + S G + EQ++RPTGL+DP VE
Sbjct: 365 GFRLPAALDNRPLRFEEFERISPQTVFVSATPGKYEEEHS-GQVVEQVVRPTGLIDPEVE 423

Query: 426 VRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDTME 485
           VRP   QVDDLL+E   R  ++ERVL+TTLTK+MAEDLT++L   G+ VRYLHSDIDT+E
Sbjct: 424 VRPVGTQVDDLLSEIHLRVEKNERVLVTTLTKKMAEDLTDYLSEHGVRVRYLHSDIDTVE 483

Query: 486 RMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRAAR 545
           RM II+ LR GE DVLVGINLLREGLD+PEVSLV+ILDADKEGFLRS  SLIQT GRAAR
Sbjct: 484 RMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 543

Query: 546 NAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYSAA 605
           N +G+ ILYAD +T SM  A+ ET RRR  QQ +NE +GI P  + K +    D      
Sbjct: 544 NLSGKAILYADRITGSMERAIGETNRRRAIQQEFNEKHGITPIGVSKKITDVMDT----- 598

Query: 606 SEGGKGKGRGRGRQAAPAVENVAEYGT-SPEDMAKHIQKLEREMREAAKELEFERAATLR 664
                    G  +++    E + +Y   S  D  K I ++E++M E AK LEFE+AA LR
Sbjct: 599 ---------GHSKKSRKVAEKLDQYKVKSLADAVKEIAQMEKQMLEYAKNLEFEKAAKLR 649

Query: 665 DRIRLLRE 672
           D I  LR+
Sbjct: 650 DEIEKLRD 657