Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 670 a.a., excinuclease ABC subunit B from Dickeya dadantii 3937

 Score =  786 bits (2029), Expect = 0.0
 Identities = 397/673 (58%), Positives = 508/673 (75%), Gaps = 9/673 (1%)

Query: 6   FRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILA 65
           F+LH++F+P GDQPEAI ++   L  G+  Q LLGVTGSGKTFT+ANVIA  NRP ++LA
Sbjct: 5   FKLHSDFKPAGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLNRPTMVLA 64

Query: 66  PNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 125
           PNKTLAAQLY E +A FP+NAVEYFVSYYDYYQPEAYVP+SDT+IEKD+S+N++I+++R 
Sbjct: 65  PNKTLAAQLYGEMKAFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMRL 124

Query: 126 AATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQRN 185
           +AT ALL RRDVV+VASVS IYGLG P+ Y ++++ +  G      A++ RL E+QY RN
Sbjct: 125 SATKALLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTQGMLIDQRAILRRLAELQYARN 184

Query: 186 DFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTVIY 245
           D  F RGTFRVRG+++++ PA   + ALR+E F ++++ +S  DPLTG ++ +V +  IY
Sbjct: 185 DQAFSRGTFRVRGEIIDIFPAESEDIALRVELFDEEVERLSLFDPLTGHIVQTVPRYTIY 244

Query: 246 PASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYCN 305
           P +HYV+ R+ +++AM +I+ EL ER +   + N+L+E QRL QRT  DLEMM ELGYC+
Sbjct: 245 PKTHYVTPRERILQAMEEIKVELAERRQVLLAGNKLLEEQRLAQRTTFDLEMMNELGYCS 304

Query: 306 GIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVDF 365
           GIENYSR L GR  G+PP  L DY P D LL +DESH+T+PQ+G MY+GDR+RK TLV++
Sbjct: 305 GIENYSRFLSGRGPGEPPPTLFDYLPADGLLVIDESHVTIPQLGGMYRGDRARKETLVEY 364

Query: 366 GFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVVE 425
           GFRLPSALDNRP++F EF     Q +YVSATPG +EL++S G + +Q++RPTGL+DP +E
Sbjct: 365 GFRLPSALDNRPMKFEEFEALAPQAIYVSATPGNYELEKSGGEVIDQVVRPTGLLDPELE 424

Query: 426 VRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDTME 485
           VRP   QVDDLL+E R RA  +ERVL+TTLTKRMAEDLTE+L   G  VRYLHSDIDT+E
Sbjct: 425 VRPVTTQVDDLLSEIRKRAVINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTVE 484

Query: 486 RMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRAAR 545
           R+ II+ LR GE DVLVGINLLREGLD+PEVSLV+ILDADKEGFLRS  SLIQT GRAAR
Sbjct: 485 RVEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAAR 544

Query: 546 NAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYSAA 605
           N  G+ ILYAD +T SM  AM+ET RRRE+QQA+NE +GI P+ + K +    D +    
Sbjct: 545 NLNGKAILYADKITPSMERAMNETQRRREKQQAYNEQHGIVPQGLNKKIG---DILQIGQ 601

Query: 606 SEGGKGKGRGRGRQAAPAVENVAEY-GTSPEDMAKHIQKLEREMREAAKELEFERAATLR 664
           S  G+GKGRG+      A E  A Y   SP+ + + I++LE +M   A+ LEFE AA LR
Sbjct: 602 SANGRGKGRGK-----KAAEPAAHYQQLSPKALDQKIRELESQMLAHAQNLEFEEAARLR 656

Query: 665 DRIRLLRERLIEA 677
           D I  LRE+ I A
Sbjct: 657 DEIHALREQFIAA 669