Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 678 a.a., excinuclease ABC, B subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  706 bits (1821), Expect = 0.0
 Identities = 365/673 (54%), Positives = 489/673 (72%), Gaps = 4/673 (0%)

Query: 6   FRLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILA 65
           F++ +++ PTGDQP AI  +   +  G   QVLLGVTGSGKTFTVANVI    RP L+L 
Sbjct: 3   FKIISDYSPTGDQPNAIKNLSEGISSGEPSQVLLGVTGSGKTFTVANVIQEVQRPTLVLC 62

Query: 66  PNKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRH 125
            NKTLAAQLY EF+  FPDNAVEYF+SYYDYYQPEA++P S  YIEKD SIN+ I+KLR 
Sbjct: 63  HNKTLAAQLYGEFKQFFPDNAVEYFISYYDYYQPEAFIPTSGVYIEKDLSINEEIEKLRL 122

Query: 126 AATHALLT-RRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQR 184
           +AT ALL+ RRDV++VASVSCIYG+G+PE + + V+ +E GQR   + L+ +LV++ Y R
Sbjct: 123 SATSALLSGRRDVIVVASVSCIYGIGNPEEFGKNVVNLEEGQRIPRNQLLFQLVDILYSR 182

Query: 185 NDFDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTVI 244
            + +F  GTFRV+GD +++  AY  + A RI F+GD+I+ I  IDP TG+ + S  +  I
Sbjct: 183 ANVEFKHGTFRVKGDTVDIFVAYA-DFAYRIYFWGDEIEGIQRIDPETGKRISSEKQITI 241

Query: 245 YPASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYC 304
           +PA+ +V+ ++ +  A+ +I+D+L  ++  ++   RL EA RL +RT  DLEM+ ELGYC
Sbjct: 242 FPANLFVTGKETIDVAIKEIQDDLMSQISFFEKDMRLEEASRLRERTEFDLEMIRELGYC 301

Query: 305 NGIENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVD 364
           +G+ENYSR+ D R+AG  P CLLDYFPDD++L +DESH+TVPQ+ AM+ GDRSRK  LV+
Sbjct: 302 SGVENYSRYFDRRSAGARPFCLLDYFPDDYMLVIDESHVTVPQIRAMWGGDRSRKVNLVE 361

Query: 365 FGFRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVV 424
           +GFRLPSALDNRPL+F EF +  NQ +YVSATP  +EL+++ GV+ EQIIRPTGL+DP++
Sbjct: 362 YGFRLPSALDNRPLKFDEFESLTNQVIYVSATPADYELNQTDGVVVEQIIRPTGLLDPLI 421

Query: 425 EVRPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDTM 484
           EVRP+  Q+DDLL E      + +RVL+TTLTKRMAE+L + L   G+  RY+HS++ ++
Sbjct: 422 EVRPSGDQIDDLLEEIDQTIKKGDRVLVTTLTKRMAEELNKFLERAGIKSRYIHSEVKSL 481

Query: 485 ERMAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRAA 544
           +R+ I++ LR G  DVLVG+NLLREGLD+PEVSLV+ILDADKEGFLR+  SL+QT GRAA
Sbjct: 482 DRVEILRELRLGIFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRNERSLVQTIGRAA 541

Query: 545 RNAAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYSA 604
           RN  GRVI+YAD VTASM+ A+DET RRR  Q A+NE +GI P+T+ KS D        A
Sbjct: 542 RNENGRVIMYADRVTASMQRAIDETKRRRSIQMAYNEEHGITPKTVIKSKDKIMGQTKVA 601

Query: 605 AS-EGGKGKGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFERAATL 663
            S +  K        + A A + V +Y  S E + K I + +++M +AAKEL F  AA L
Sbjct: 602 DSKKNAKFYDDHFTEENAYAADPVVQY-LSKEKLEKLIPQTQKQMEKAAKELNFMEAARL 660

Query: 664 RDRIRLLRERLIE 676
           RD  +  ++RL E
Sbjct: 661 RDEWQGQKKRLEE 673