Pairwise Alignments

Query, 677 a.a., excinuclease ABC, B subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 988 a.a., excinuclease ABC subunit B from Agrobacterium fabrum C58

 Score =  753 bits (1943), Expect = 0.0
 Identities = 384/670 (57%), Positives = 478/670 (71%), Gaps = 17/670 (2%)

Query: 7   RLHTEFEPTGDQPEAIGQIVANLGHGVRDQVLLGVTGSGKTFTVANVIAACNRPALILAP 66
           R+ +E++P GDQP AI  +V  +  G R QVLLGVTGSGKTFT+A VI A  RPA+ILAP
Sbjct: 172 RMDSEYQPAGDQPTAIADLVEGINSGERSQVLLGVTGSGKTFTMAKVIEATQRPAVILAP 231

Query: 67  NKTLAAQLYNEFRALFPDNAVEYFVSYYDYYQPEAYVPASDTYIEKDSSINDNIDKLRHA 126
           NKTLAAQLY+EF+  FPDNAVEYFVSYYDYYQPEAYVP SDT+IEK+SSIN+ ID++RH+
Sbjct: 232 NKTLAAQLYSEFKNFFPDNAVEYFVSYYDYYQPEAYVPRSDTFIEKESSINEQIDRMRHS 291

Query: 127 ATHALLTRRDVVIVASVSCIYGLGSPEYYARLVIPVECGQRFSMDALMTRLVEVQYQRND 186
           AT +LL R D +IVASVSCIYG+GS E Y  +   ++ G R     L+  LV  QY+R D
Sbjct: 292 ATRSLLERDDCIIVASVSCIYGIGSVETYTAMTFQMQVGDRLDQRQLLADLVAQQYKRRD 351

Query: 187 FDFHRGTFRVRGDVLEVIPAYHHERALRIEFFGDDIDAISEIDPLTGEVLGSVGKTVIYP 246
            DF RG+FRVRGD +E+ PA+  + A RI  FGD+ID+I+E DPLTG+  G +    IY 
Sbjct: 352 MDFQRGSFRVRGDTIEIFPAHLEDAAWRISMFGDEIDSITEFDPLTGQKTGDLQSVKIYA 411

Query: 247 ASHYVSDRDNLVRAMSDIRDELGERLREYQSANRLVEAQRLEQRTMLDLEMMEELGYCNG 306
            SHYV+ R  L  A+  I++EL  RL E + A RL+EAQRLEQRT  D+EM+E  G C G
Sbjct: 412 NSHYVTPRPTLNGAIKSIKEELKVRLAELEKAGRLLEAQRLEQRTRYDIEMLEATGSCAG 471

Query: 307 IENYSRHLDGRAAGQPPSCLLDYFPDDFLLFVDESHITVPQVGAMYKGDRSRKSTLVDFG 366
           IENYSR+L GR  G+PP  L +Y PD+ LLF+DESH++V Q+G MY+GD  RK+TL ++G
Sbjct: 472 IENYSRYLTGRNPGEPPPTLFEYIPDNALLFIDESHVSVSQIGGMYRGDFRRKATLAEYG 531

Query: 367 FRLPSALDNRPLEFAEFLTRINQTVYVSATPGKWELDRSQGVIAEQIIRPTGLVDPVVEV 426
           FRLPS +DNRPL F E+      TV VSATPG WE+++S GV AEQ+IRPTGL+DP VEV
Sbjct: 532 FRLPSCMDNRPLRFEEWDAMRPLTVAVSATPGSWEMEQSGGVFAEQVIRPTGLIDPPVEV 591

Query: 427 RPTRGQVDDLLAECRARAARDERVLITTLTKRMAEDLTEHLGNMGLSVRYLHSDIDTMER 486
           R  R QVDD+L E R  AA+  R L T LTKRMAEDLTE+L   G+ VRY+HSDIDT+ER
Sbjct: 592 RSARSQVDDVLGEIRETAAKGYRTLCTVLTKRMAEDLTEYLHEQGVRVRYMHSDIDTLER 651

Query: 487 MAIIQALRRGECDVLVGINLLREGLDIPEVSLVSILDADKEGFLRSTGSLIQTFGRAARN 546
           + II+ LR G  DVLVGINLLREGLDIPE   V+ILDADKEGFLRS  SLIQT GRAARN
Sbjct: 652 IEIIRDLRLGAFDVLVGINLLREGLDIPECGFVAILDADKEGFLRSETSLIQTIGRAARN 711

Query: 547 AAGRVILYADTVTASMRAAMDETARRRERQQAWNEANGIEPRTIRKSLDTPFDAIYS--- 603
             G+VILYAD +T SM+ AM+ET+RRRE+Q A+N  +GI P +++  +    D++Y    
Sbjct: 712 VDGKVILYADNITGSMKRAMEETSRRREKQMAYNAEHGITPESVKAKISDILDSVYERDH 771

Query: 604 --AASEGGKGKGRGRGRQAAPAVENVAEYGTSPEDMAKHIQKLEREMREAAKELEFERAA 661
             A   G  GKG   G                  ++  H+  LE+ MR+AA +L+FE+AA
Sbjct: 772 VRADISGVSGKGFADGGHLV------------GNNLQAHLNALEKSMRDAAADLDFEKAA 819

Query: 662 TLRDRIRLLR 671
            LRD I+ L+
Sbjct: 820 RLRDEIKRLK 829