Pairwise Alignments

Query, 404 a.a., outer membrane transport protein, OmpP1/FadL/TodX family (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 484 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 93.6 bits (231), Expect = 1e-23
 Identities = 101/471 (21%), Positives = 172/471 (36%), Gaps = 83/471 (17%)

Query: 10  LALCPLQAWAAGYGVYEWSARGNALGGAMVARDADPSSVAYNPAAIT-----------DL 58
           +A  P QA       Y     G A  G  + ++ DPSS   NPAA+            D 
Sbjct: 21  MATAPAQAGGFSTPTYGAPGWGRAFAGGSLFKN-DPSSAYNNPAAMAFVEHNVAQFTVDY 79

Query: 59  EGAQIQMGATAIAPTAKMTSNTP--------------GKRDAEFSDSIWGLPTFYYTQQL 104
              +I+    A        SNTP                 D         LPT +    L
Sbjct: 80  ARIKIKYKGDASDYAGNPISNTPLDANGFPDGTATTVNNNDGGQGGFTAWLPTGFMVMPL 139

Query: 105 SDNYWFGFGMFSRVGLGTDYKDTDTWPGRYNCSYAAIHSVSLNPNLAMKLTDELSVAFGL 164
            D + FG       G+ + + +      R       I +V L  +L+ K+ D+ S+  G+
Sbjct: 140 GDRFAFGLSQVVPQGMRSTWDENSKL--RDFAVDTKIETVGLTGSLSFKVNDQFSIGGGV 197

Query: 165 DATYLRFMYDTTIS-----------------PVDV---MQQIDADGWAYGLNLGARYKPY 204
              + +      +                  P DV   + ++  D  + G   G  +KP 
Sbjct: 198 IVQHSKGFVSQNVDLLSAAAVSDSVLGGINFPSDVGHALMRVKVDNISAGWFTGVVWKPT 257

Query: 205 DWLAFGVAWRSEMQLTVNGN-------------------------VDFTQKGAVPAPAAR 239
           +    G+ + ++++  + G                          V+    G   AP   
Sbjct: 258 ERDTLGLNYHAKIKNKMTGKYNIYADQFSYNLMTQPSPFGGSGTLVNTAYPGLELAPDGA 317

Query: 240 DVRGTEPIPESITFGVMVKPFDKLSLEVDAVWTRWSAYNTLVINYDPALYGKSSVSAEKN 299
                  IP +     + +  D+ +L     WT WS++  L +N      G + VS   N
Sbjct: 318 HASVQLDIPATAGLDWVHQFNDRFTLGASVTWTEWSSFKDLTLNSG----GTTIVSIPYN 373

Query: 300 WKNTWRLQFGAEYALTDSIDLRAGYVYDQTPVDDAHEDYAVPCSDRQIATTGIGWKIN-- 357
           +KNTW    G +Y +TD + LRAG   DQTP  ++  D  +P  DR   + G G+ +   
Sbjct: 374 YKNTWMYSLGGDYRVTDELTLRAGVALDQTPTRNSTRDPRIPDGDRTFLSLGAGYDVKAI 433

Query: 358 EAWVLDASYSYLWMTDREYEA----RSGGIYDSTREDAHAHMAGLSLTYKF 404
           +   +D +YS+ ++ + + +     R GG   + + ++   +  +S TY F
Sbjct: 434 KGLSVDLAYSHQFVQEVKLKTQNVDRLGGASLNGKAESSGDVVSVSATYAF 484