Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1154 a.a., DNA polymerase III subunit alpha from Magnetospirillum magneticum AMB-1

 Score =  832 bits (2148), Expect = 0.0
 Identities = 477/1073 (44%), Positives = 657/1073 (61%), Gaps = 34/1073 (3%)

Query: 2    SDFVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIK 61
            +DFVHL  HT YSL +GAI+LK L    +   M A  ITD  NLFGA  F T+C   GI+
Sbjct: 5    ADFVHLRVHTAYSLAEGAIKLKQLIKLCEKAAMPAVGITDTANLFGALEFSTSCSDAGIQ 64

Query: 62   PIIGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTE-GFHYKPRV 120
            PI+G ++ +   D              LVLL QN  GY NL++LV++ F E      P+V
Sbjct: 65   PIVGAQIAIRREDGGPSKDGRKPEPDTLVLLCQNEAGYLNLLKLVSKAFLETDAGETPQV 124

Query: 121  DKELLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSNGIK 180
                L   SDGLI L+   AG V R+L     +         A  F GR Y+EL  + ++
Sbjct: 125  TLHDLETRSDGLIVLTGGPAGPVGRLLADGQTEKAEIVLARLARAFAGRCYVELMRHNLE 184

Query: 181  EQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRFETR 240
             ++ +   L+ LA   +LPLVATN+  + D    EAHD L+CI     +   +R R  T 
Sbjct: 185  VEDRIEPLLVSLAYKHDLPLVATNEAFFADRGMYEAHDALVCIAEGAYISQDERRRL-TP 243

Query: 241  ELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTLDTEFQRL 300
            E Y+KSPEEM   FA +PEA  NT  IA  C   ++  K   P Y + +G+T     ++ 
Sbjct: 244  EHYFKSPEEMRALFADLPEACDNTLVIARRCAFGVAKRKPILPPYRM-DGLTEAEVLRKK 302

Query: 301  AEEGLKKRLEKHPDR-----DTIDH--KAYWDRLEWELKVITDMGFPGYFLIVQDFINWA 353
              EGL+ RLEKH  +     D  +H  K Y +R+E+EL VI +MGFPGYFLIV DFI W+
Sbjct: 303  TWEGLEARLEKHVFKEGMTDDEKEHAAKPYRERIEFELNVIEEMGFPGYFLIVSDFIQWS 362

Query: 354  KNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRR 413
            K   IPVGPGRGS AGS VAW+L IT+LDP+ + LLFERFLN ERVSMPD D+DFC+ RR
Sbjct: 363  KAQEIPVGPGRGSGAGSAVAWALTITDLDPLRWGLLFERFLNPERVSMPDFDIDFCQDRR 422

Query: 414  TEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPED--LKM 471
             E IRYV  KYG   V+QI TFGK++A+AV+RDVGR L M +G+ DRI KL+P +    M
Sbjct: 423  EETIRYVQGKYGYSQVAQIITFGKLQARAVLRDVGRVLQMPYGQVDRICKLVPNNPANPM 482

Query: 472  TIKKALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLY 531
            T+++ALE+EP L      D  +  L+D++M+LEGL RHASTHAAGVVI D+P+ E +PLY
Sbjct: 483  TLEQALESEPLLKEQKERDEAVSHLIDLAMKLEGLYRHASTHAAGVVIGDRPLDELVPLY 542

Query: 532  KGKKGE-TVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLSLDD 590
            +  + +  VTQF+MK VE  GLVKFDFLGL+T+T++  A+  + +      DL  + LDD
Sbjct: 543  RDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVMVTAVKHVKKTKGIDIDLSAIPLDD 602

Query: 591  AETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIK 650
            A++YEL SRGD  GVFQ+ESSGMR  LR + P   +D+IA++ALYRPGP+    +  +I 
Sbjct: 603  AKSYELLSRGDAAGVFQLESSGMRDVLRKMGPNRLEDLIAVVALYRPGPM--DQIPRYIA 660

Query: 651  RKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKIAE 710
             KHG+    Y  P LE  L+ T+G++VYQEQVMQIAQ++  Y+LGGADLLRRAMGKK  E
Sbjct: 661  CKHGKEEPDYMHPLLEPILKETFGIMVYQEQVMQIAQVLSGYSLGGADLLRRAMGKKDRE 720

Query: 711  AMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKVHF 770
             M  +R KFV+GA    +   +A+ IFD + KFAEYGFNKSH+AAYALI+Y TA+LK ++
Sbjct: 721  EMDRQRAKFVEGATARAVDGGQASMIFDKVAKFAEYGFNKSHAAAYALIAYQTAWLKANY 780

Query: 771  PVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVH-----EGRIVFG 825
            P EFMAA +T EM N DKL  +      + I++L P++  S+  F+V         + + 
Sbjct: 781  PAEFMAATMTYEMSNTDKLNSFRQELDRLGIKLLPPDINASQPTFSVEVLPDGGSAVRYA 840

Query: 826  LGGIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCT 885
            L  +KNVG+ A++ +VD RE GG +  + D   R++ + + +R +EN++K G  D L   
Sbjct: 841  LAALKNVGEAAMKSLVDERERGGRFKDVGDFAARMDSKVLNRRQLENMVKAGVFDSLDKN 900

Query: 886  RAGMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQK 945
            R  +  + DT+   A    ++RDS+Q+SL       P +        + ++ P+W   +K
Sbjct: 901  RGRLFKNADTLCRYAASAAEDRDSSQMSLLGG-SNAPTL--------KLESGPDWSPHEK 951

Query: 946  LRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEE-ARDMPPGAE--IRTAVLVTTLKELM 1002
            L  E EA+GF+L++HPL  Y K + RL +  + E  R +  G +  +R A  + + +E +
Sbjct: 952  LNQEFEAVGFYLSAHPLDAYAKSMKRLNVLKIAELPRHLQSGGKGRVRLAGSLLSKQERV 1011

Query: 1003 TKKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADD 1055
            + KG R AF    D +   EV  F E  A +RELL +  PLL++  +D K ++
Sbjct: 1012 SAKGSRYAFLQFSDASGMFEVTCFSEILATSRELLDAGGPLLID--VDAKLEE 1062