Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1144 a.a., DNA polymerase III alpha subunit (EC 2.7.7.7) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  890 bits (2299), Expect = 0.0
 Identities = 498/1160 (42%), Positives = 716/1160 (61%), Gaps = 48/1160 (4%)

Query: 15   LLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPIIGCEVYVAATD 74
            ++DG  +   L  +A   GM A AITD  NL G   FY      GIKPI+G +  V    
Sbjct: 1    MIDGLAKTGPLVKKAASLGMPALAITDFTNLCGLVKFYGAGHGAGIKPIVGADFNVHNEL 60

Query: 75   RTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGFHYK-PRVDKELLREYSDGLI 133
              D+ +       HL +LA NN GY NL  L+++ +  G+    P ++++ L E  +GLI
Sbjct: 61   LGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIERDWLVELKEGLI 113

Query: 134  ALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSNGIKEQEVLNEKLIELA 193
             LS    G+V R L++            Y + FP R++LEL   G +++E      +ELA
Sbjct: 114  LLSGGRMGDVGRCLLRGNQALVEECVAFYEAHFPDRYFLELIRTGRQDEETYLHAAVELA 173

Query: 194  GHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRFETRELYYKSPEEMEKA 253
                LP+VATND  +L++ D +AH+I + I    T+DDPKR R  + + Y +S EEM + 
Sbjct: 174  EARGLPVVATNDVRFLESDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEEMCEL 233

Query: 254  FAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEG-MTLDTEFQRLAEEGLKKRLE-K 311
            F+ +PEA+ NT  IA+ CN+ +  G+YF P  + P G MT +    + A+EGL++RL   
Sbjct: 234  FSDIPEALENTVEIAKRCNVTVRLGEYFLP--QFPTGDMTTEDYLVKKAKEGLEERLAFL 291

Query: 312  HPDRDTIDHKA--YWDRLEWELKVITDMGFPGYFLIVQDFINWAKNNGIPVGPGRGSAAG 369
             PD +    +   Y +RL+ EL+VI  MGFPGYFLIV +FI W+K+NG+PVGPGRGS AG
Sbjct: 292  FPDEEERKKRRPEYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSGAG 351

Query: 370  SLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRRTEVIRYVAEKYGEDSV 429
            SLVA++L+IT+LDP+ +DLLFERFLN ERVSMPD DVDFC  +R +VI +VA+ YG D+V
Sbjct: 352  SLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRDAV 411

Query: 430  SQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTIKKALEAEPDLATLYRD 489
            SQI TFG M AKAV+RDVGR LG  +G  DRI+KL+P D  MT+ KA EAEP L  +Y  
Sbjct: 412  SQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQLPEIYEA 471

Query: 490  DPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYKGKKGE-TVTQFDMKMVE 548
            D ++R L+D++ +LEG++R+A  HA GVVI+   ++++ PLY  ++G+  VTQFD   VE
Sbjct: 472  DEEVRALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSDVE 531

Query: 549  KVGLVKFDFLGLRTMTLVQDALDEITRQ----GKTPPDLDTLSLDDAETYELYSRGDTDG 604
              GLVKFDFLGLRT+T++  AL+ I ++    G+ P D+  + LDD +++++  R +T  
Sbjct: 532  YAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSETTA 591

Query: 605  VFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIKRKHGEVPVTYP--- 661
            VFQ+ES GM+  ++ L+P CF+D+IA++AL+RPGPL SGMVD FI RKHG   ++YP   
Sbjct: 592  VFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREELSYPDVQ 651

Query: 662  --VPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKIAEAMAEERTKF 719
                SL+  L+PTYG+I+YQEQVMQIAQ++  YTLGGAD+LRRAMGKK  E MA++R+ F
Sbjct: 652  WQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEMAKQRSVF 711

Query: 720  VQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKVHFPVEFMAALL 779
             +GA+KN I  E A +IFDL+EKFA YGFNKSHSAAYAL+SY T +LK H+P EFMAA++
Sbjct: 712  EEGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMAAVM 771

Query: 780  TSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVH-EGRIVFGLGGIKNVGDEAIR 838
            T++M N +K++  V  C  M +++L P++      F V+ EG IV+G+G IK VG+  I 
Sbjct: 772  TADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDEGEIVYGIGAIKGVGEGPIE 831

Query: 839  EIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRAGMLASLDTVVA 898
             I+DAR +GG +  L D+C R + +K+ +RV+E LI  GA D LG  RA ++ SL   + 
Sbjct: 832  AIIDARNQGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGDALK 891

Query: 899  RAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQKLRFEKEALGFFLT 958
             A +  K     Q  +F ++ EEP+        C+      WP+   L  E+E LG +LT
Sbjct: 892  AADQHAKAEAIGQTDMFGVLAEEPEQIEQSYASCQ-----PWPEQVVLDGERETLGLYLT 946

Query: 959  SHPLQPYRKELFR-LRLTPLEEARDMPPGAEIRTAVLVTTLKELMTKKGQRMAFAGVEDL 1017
             HP+  Y KE+ R +    L++      G     A LV   + ++TK+G R+    ++D 
Sbjct: 947  GHPINQYLKEIERYVGGVRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLDDR 1006

Query: 1018 TASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADDGNGGQGQGGDDEEAAPRDIKIM 1077
            +   EV+ F +   + ++LL+ D+ L++ G +    DD +GG              +K+ 
Sbjct: 1007 SGRLEVMLFTDALDKYQQLLEKDRILIVSGQV--SFDDFSGG--------------LKMT 1050

Query: 1078 GAKVMPLAMACCSSDEPVIVELDTRRMSADYLAGLRAILEKHK-GTVPVNVHMVVDESLC 1136
              +VM +  A       + + L  R++    L  LR  LE H+ GT+PV+++    ++  
Sbjct: 1051 AREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARA 1110

Query: 1137 LLQLGPRWTVQPGPVFENDL 1156
             L+ G  W V P     NDL
Sbjct: 1111 RLRFGATWRVSPSDRLLNDL 1130