Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1160 a.a., DNA polymerase III subunit alpha from Dickeya dianthicola ME23

 Score =  885 bits (2288), Expect = 0.0
 Identities = 502/1177 (42%), Positives = 717/1177 (60%), Gaps = 60/1177 (5%)

Query: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63
            FVHL  H++YS++DG  +   L  +A   GM A AITD  NL G   FY      GIKPI
Sbjct: 6    FVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGGAHGAGIKPI 65

Query: 64   IGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGFHYK-PRVDK 122
            IG + Y+ + +  D+ +       HL +LA NNEGY NL  L++R +  G+    P +D+
Sbjct: 66   IGADFYLQSEELGDELA-------HLTILAMNNEGYQNLTLLISRAYQRGYGAAGPTIDR 118

Query: 123  ELLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSNGIKEQ 182
              L E+  GL+ LS    G++ + L++        +   Y   FP RFYLEL   G  ++
Sbjct: 119  AWLVEHQAGLLLLSGGRHGDIGKFLLRGNQVLVEQSVAFYQQHFPQRFYLELVRTGRPDE 178

Query: 183  EVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRFETREL 242
            E      I LA    LP+VATND  ++   D EAH+I + I    T+DDPKR R  + + 
Sbjct: 179  ESYLHAAIALATAHGLPVVATNDVCFISQDDFEAHEIRVAIHDGFTLDDPKRPRNYSVKQ 238

Query: 243  YYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEG-MTLDTEFQRLA 301
            Y +S EEM + FA +PEA+ NT  IA+ CN+ +  G+YF P  + P G M+ +      +
Sbjct: 239  YLRSEEEMCELFADIPEALINTVEIAKRCNVTIRLGEYFLP--QFPTGDMSTEDYLVMCS 296

Query: 302  EEGLKKRLE-KHPDRDTIDHKA--YWDRLEWELKVITDMGFPGYFLIVQDFINWAKNNGI 358
             +GL++RL    PD      +   Y +RLE EL VI  MGFPGYFLIV +FI W+K+N +
Sbjct: 297  RKGLEERLTFLFPDEAVRAQRRPEYDERLEIELNVINQMGFPGYFLIVMEFIQWSKDNDV 356

Query: 359  PVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRRTEVIR 418
            PVGPGRGS AGSLVA++L IT+LDP+ +DLLFERFLN ERVSMPD DVDFC  +R  VI 
Sbjct: 357  PVGPGRGSGAGSLVAYALNITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDLVID 416

Query: 419  YVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTIKKALE 478
            +VA+ YG D+VSQI TFG M AKAV+RDVGR LG  +G  DRI+KL+P D  MT++KA  
Sbjct: 417  HVADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLEKAFA 476

Query: 479  AEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYKGKKG-E 537
            AEP L  +Y  D +++ L+D++ +LEG++R+A  HA GVVIS   ++++ PLY   +G  
Sbjct: 477  AEPQLGEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVISPTKITDFAPLYCDPEGNH 536

Query: 538  TVTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEIT----RQGKTPPDLDTLSLDDAET 593
             VTQFD   VE  GLVKFDFLGLRT+T++  AL+ I     +QG  P D+  + L D ++
Sbjct: 537  PVTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINARRGKQGLEPVDIAAIPLQDKKS 596

Query: 594  YELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIKRKH 653
            +++  R +T  VFQ+ES GM+  ++ L+P CF+D+IA++AL+RPGPL SGMVD FI RKH
Sbjct: 597  FDMLQRSETTAVFQLESRGMKDLIKRLKPDCFEDMIALVALFRPGPLQSGMVDNFIDRKH 656

Query: 654  GEVPVTYP-----VPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKI 708
            G   ++YP       +L+  L+PTYG+I+YQEQVMQIAQ++  YTLGGAD+LRRAMGKK 
Sbjct: 657  GREAISYPDIQWQHETLKPVLEPTYGIILYQEQVMQIAQVLAGYTLGGADMLRRAMGKKK 716

Query: 709  AEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKV 768
             E MA++R+ F +GA+K  +  E + +IFDL+EKFA YGFNKSHSAAYAL+SY T +LK 
Sbjct: 717  PEEMAKQRSVFKEGAEKMGVDGELSMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKA 776

Query: 769  HFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVH-EGRIVFGLG 827
            H+P EFMAA++T++M N DK++  V  C  + +++L P++      F V+ EG IV+G+G
Sbjct: 777  HYPAEFMAAVMTADMDNTDKIVGLVDECWRIGLKILPPDINSGLYHFHVNDEGEIVYGIG 836

Query: 828  GIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRA 887
             IK VG+  I  I++AR   G +  L D+C R +++K+ +RV+E LI  GA D LG  RA
Sbjct: 837  AIKGVGEGPIEAIIEARNNDGYFRDLFDLCARTDIKKLNRRVLEKLIMSGAFDRLGPHRA 896

Query: 888  GMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQKLR 947
             ++ SL   +  A++  K     Q  +F ++ E P+       +    T P WP+   L 
Sbjct: 897  ALMNSLADAMKSAEQHAKAEAIGQADMFGVLAETPE-----QVEQSYSTVPPWPEQVVLD 951

Query: 948  FEKEALGFFLTSHPLQPYRKELFR----LRLTPLEEARDMPP--GAEIRTAV-LVTTLKE 1000
             E+E LG +LT HP+  Y KE+ R    +RL      +DM P    ++ TAV LV   + 
Sbjct: 952  GERETLGLYLTGHPINQYLKEIERYAGGVRL------KDMHPTERGKMTTAVGLVLAARV 1005

Query: 1001 LMTKKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADDGNGGQ 1060
            ++TK+G R+    ++D +   EV+ F +   + + LL+ D+ L+  G +    DD +GG 
Sbjct: 1006 MVTKRGNRIGVCTLDDRSGRLEVMLFTDALEKYQHLLEQDRILIASGQV--SFDDFSGG- 1062

Query: 1061 GQGGDDEEAAPRDIKIMGAKVMPLAMACCSSDEPVIVELDTRRMSADYLAGLRAILEKHK 1120
                         +K+   ++M ++ A       + + L  R++    L  LR  LE H+
Sbjct: 1063 -------------LKMTVRELMDISEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHR 1109

Query: 1121 -GTVPVNVHMVVDESLCLLQLGPRWTVQPGPVFENDL 1156
             GT+PV+++    ++   L+ G  W + P     NDL
Sbjct: 1110 SGTIPVHLYYQRQDARARLRFGAAWRITPTDGLLNDL 1146