Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1160 a.a., DNA polymerase III alpha subunit from Escherichia coli BL21

 Score =  910 bits (2353), Expect = 0.0
 Identities = 507/1170 (43%), Positives = 726/1170 (62%), Gaps = 46/1170 (3%)

Query: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63
            FVHL  H++YS++DG  +   L  +A   GM A AITD  NL G   FY      GIKPI
Sbjct: 6    FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65

Query: 64   IGCEVYVAATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFTEGFHYK-PRVDK 122
            +G +  V      D+ +       HL +LA NN GY NL  L+++ +  G+    P +D+
Sbjct: 66   VGADFNVQCDLLGDELT-------HLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDR 118

Query: 123  ELLREYSDGLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQSNGIKEQ 182
            + L E ++GLI LS    G+V R L++            Y   FP R++LEL   G  ++
Sbjct: 119  DWLIELNEGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDE 178

Query: 183  EVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMRFETREL 242
            E      +ELA    LP+VATND  ++D++D +AH+I + I    T+DDPKR R  + + 
Sbjct: 179  ESYLHAAVELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQ 238

Query: 243  YYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVYELPEGMTLDTEFQRLAE 302
            Y +S EEM + FA +PEA+ANT  IA+ CN+ +  G+YF P +   +  T D   +R A+
Sbjct: 239  YMRSEEEMCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKR-AK 297

Query: 303  EGLKKRLE-KHPDRDTIDHKA--YWDRLEWELKVITDMGFPGYFLIVQDFINWAKNNGIP 359
            EGL++RL    PD +    +   Y +RLE EL+VI  MGFPGYFLIV +FI W+K+NG+P
Sbjct: 298  EGLEERLAFLFPDEEERVKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVP 357

Query: 360  VGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCERRRTEVIRY 419
            VGPGRGS AGSLVA++L+IT+LDP+ +DLLFERFLN ERVSMPD DVDFC  +R +VI +
Sbjct: 358  VGPGRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEH 417

Query: 420  VAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLKMTIKKALEA 479
            VA+ YG D+VSQI TFG M AKAV+RDVGR LG  +G  DRI+KLIP D  MT+ KA EA
Sbjct: 418  VADMYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEA 477

Query: 480  EPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYLPLYKGKKGE-T 538
            EP L  +Y  D +++ L+D++ +LEG++R+A  HA GVVI+   ++++ PLY  ++G+  
Sbjct: 478  EPQLPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHP 537

Query: 539  VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQ----GKTPPDLDTLSLDDAETY 594
            VTQFD   VE  GLVKFDFLGLRT+T++  AL+ I ++    G+ P D+  + LDD +++
Sbjct: 538  VTQFDKSDVEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSF 597

Query: 595  ELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDEFIKRKHG 654
            ++  R +T  VFQ+ES GM+  ++ L+P CF+D+IA++AL+RPGPL SGMVD FI RKHG
Sbjct: 598  DMLQRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHG 657

Query: 655  EVPVTYP-----VPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKKIA 709
               ++YP       SL+  L+PTYG+I+YQEQVMQIAQ++  YTLGGAD+LRRAMGKK  
Sbjct: 658  REEISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKP 717

Query: 710  EAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLKVH 769
            E MA++R+ F +GA+KN I  E A +IFDL+EKFA YGFNKSHSAAYAL+SY T +LK H
Sbjct: 718  EEMAKQRSVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAH 777

Query: 770  FPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVH-EGRIVFGLGG 828
            +P EFMAA++T++M N +K++  V  C  M +++L P++      F V+ +G IV+G+G 
Sbjct: 778  YPAEFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGA 837

Query: 829  IKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRAG 888
            IK VG+  I  I++AR +GG +  L D+C R + +K+ +RV+E LI  GA D LG  RA 
Sbjct: 838  IKGVGEGPIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAA 897

Query: 889  MLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAPEWPDDQKLRF 948
            ++ SL   +  A +  K     Q  +F ++ EEP+        C+      WP+   L  
Sbjct: 898  LMNSLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQ-----PWPEQVVLDG 952

Query: 949  EKEALGFFLTSHPLQPYRKELFR-LRLTPLEEARDMPPGAEIRTAVLVTTLKELMTKKGQ 1007
            E+E LG +LT HP+  Y KE+ R +    L++      G  I  A LV   + ++TK+G 
Sbjct: 953  ERETLGLYLTGHPINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGN 1012

Query: 1008 RMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKADDGNGGQGQGGDDE 1067
            R+    ++D +   EV+ F +   + ++LL+ D+ L++ G +    DD +GG        
Sbjct: 1013 RIGICTLDDRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQV--SFDDFSGG-------- 1062

Query: 1068 EAAPRDIKIMGAKVMPLAMACCSSDEPVIVELDTRRMSADYLAGLRAILEKHK-GTVPVN 1126
                  +K+   +VM +  A       + + L  R++    L  LR  LE H+ GT+PV+
Sbjct: 1063 ------LKMTAREVMDIDEAREKYARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVH 1116

Query: 1127 VHMVVDESLCLLQLGPRWTVQPGPVFENDL 1156
            ++    ++   L+ G  W V P     NDL
Sbjct: 1117 LYYQRADARARLRFGATWRVSPSDRLLNDL 1146