Pairwise Alignments

Query, 1164 a.a., DNA polymerase III, alpha subunit (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 1167 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  801 bits (2070), Expect = 0.0
 Identities = 470/1073 (43%), Positives = 652/1073 (60%), Gaps = 38/1073 (3%)

Query: 4    FVHLHCHTEYSLLDGAIRLKDLGARAKDYGMTAAAITDHGNLFGAAYFYTTCKSFGIKPI 63
            FVHL  H+ YSLL+GA+ LK + ++A   G  A AITD  NLF A  F    +  G++PI
Sbjct: 20   FVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDEGLQPI 79

Query: 64   IGCEVYV----AATDRTDKTSEFARTRYHLVLLAQNNEGYHNLVRLVTRGFT--EGFHYK 117
            IGC++ +    AA DR +  S   +    +VLLA N EGY  LV LV+R +   EG  + 
Sbjct: 80   IGCQLSIDMQDAAEDRRNHNSHLQKLPA-IVLLAANAEGYERLVDLVSRAYLDGEGGSHS 138

Query: 118  PRVDKELLREYSD-GLIALSACLAGEVPRVLMKQGMDAGIATAQEYASIFPGRFYLELQS 176
              + +  L E S+ GLIAL+    G V   L +              S+F  R Y+ELQ 
Sbjct: 139  VHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYIELQR 198

Query: 177  NGIKEQEVLNEKLIELAGHTNLPLVATNDCHYLDATDVEAHDILLCIQTQTTVDDPKRMR 236
                ++     +LI LA   ++PLVATN+  +    D EAHD L+ +     V D  R R
Sbjct: 199  QSGYDRSH-ERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSDDSRFR 257

Query: 237  FETRELYYKSPEEMEKAFAHVPEAIANTGRIAEMCNIEMSFGKYFFPVY----ELPEGMT 292
              T + Y KS +EM   FA +PEA+ NT  IA  C+  +       P +    + PE   
Sbjct: 258  L-TPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPRFTGASDDPEAAE 316

Query: 293  L--DTEFQRLAEEGLKKRLEKHPDRDTIDHKAYWDRLEWELKVITDMGFPGYFLIVQDFI 350
                 E +R A EGL +RL           + Y +RL++EL VI+ M FPGYFLIV DFI
Sbjct: 317  RAETEELRRQAVEGLDQRLSALGMAPGYTEQDYRERLDFELGVISRMKFPGYFLIVADFI 376

Query: 351  NWAKNNGIPVGPGRGSAAGSLVAWSLRITNLDPIPYDLLFERFLNNERVSMPDIDVDFCE 410
             WAK   IPVGPGRGS AGSLVA++L IT++DP+ + LLFERFLN ERVSMPD D+DFC+
Sbjct: 377  KWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQ 436

Query: 411  RRRTEVIRYVAEKYGEDSVSQITTFGKMKAKAVVRDVGRALGMSFGETDRIAKLIPEDLK 470
             RR EVIRYV  KYG + V+QI TFG ++A+A +RDVGR L M +G+ D+I KL+P +  
Sbjct: 437  DRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPA 496

Query: 471  --MTIKKALEAEPDLATLYRDDPQIRKLLDVSMRLEGLSRHASTHAAGVVISDKPMSEYL 528
                + KA+E EP L      +P + +LLD++ ++EGL RHASTHAAG+VI D+P+S+ +
Sbjct: 497  NPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLV 556

Query: 529  PLYKGKKGET-VTQFDMKMVEKVGLVKFDFLGLRTMTLVQDALDEITRQGKTPPDLDTLS 587
            P+Y+  + +  VTQF+MK VE  GLVKFDFLGL+T+T+++ A+D + ++G    DL  + 
Sbjct: 557  PMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRG-IKVDLAAIP 615

Query: 588  LDDAETYELYSRGDTDGVFQVESSGMRQYLRMLRPTCFDDIIAMLALYRPGPLGSGMVDE 647
            L+DA+TYE+ SRG+T GVFQVES+GMR+ L  +RP C +DIIA++ALYRPGP+ +  +  
Sbjct: 616  LEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMEN--IPV 673

Query: 648  FIKRKHGEVPVTYPVPSLEACLQPTYGVIVYQEQVMQIAQIVGSYTLGGADLLRRAMGKK 707
            +  RKHGE  +    P+++  L+ T GVIVYQEQVMQIAQ++  Y+LG ADLLRRAMGKK
Sbjct: 674  YNARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKK 733

Query: 708  IAEAMAEERTKFVQGAQKNDIPKEKANEIFDLMEKFAEYGFNKSHSAAYALISYYTAFLK 767
            I E M ++R +FV GA KN + K +AN IFDL+ KFA YGFNKSH+AAYA++SY TA++K
Sbjct: 734  IKEEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMK 793

Query: 768  VHFPVEFMAALLTSEMGNQDKLLKYVAACKDMDIEVLRPNVQVSRREFTVHEGRIVFGLG 827
             H+PVEF+AA +T +M N +KL  +      + IEV+ P+VQ S R+F   E RI + L 
Sbjct: 794  AHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTSFRQFETGENRIYYSLA 853

Query: 828  GIKNVGDEAIREIVDAREEGGPYASLLDMCVRVNLRKVTKRVIENLIKGGACDCLGCTRA 887
             IK VG+ A+  IV  R E  P+ SL D C+R++ +++ +RV+E+LI  GA DC G  RA
Sbjct: 854  AIKGVGEGAVEHIVQVRGE-KPFTSLEDFCLRIDPKQINRRVLESLINAGAFDCFGRDRA 912

Query: 888  GMLASLDTVVARAQKKLKERDSNQVSLFTMIKEEPKVCPGIGFDCEEQTAP---EWPDDQ 944
             ++  LD ++  AQ     R   Q  +F           G G   E+   P    W   +
Sbjct: 913  ELIGGLDRIIGYAQMAQNNRTIGQSDMFG---------SGGGTGPEKLILPAFQSWLPSE 963

Query: 945  KLRFEKEALGFFLTSHPLQPYRKELFRLRLTPLEE-ARDMPPGAEI--RTAVLVTTLKEL 1001
            KL  E + LGF+LT+HPL  YR  L +LR+    + +  +  GA    R A  VT  +E 
Sbjct: 964  KLIREYQVLGFYLTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGRLAGTVTGKQER 1023

Query: 1002 MTKKGQRMAFAGVEDLTASAEVVFFPEPFAEARELLKSDQPLLLEGTLDKKAD 1054
             T+ G +M      D +   E V F E  A+ R+LL+  + L++    +++ +
Sbjct: 1024 KTRTGNKMGIVTFSDASGQYEAVLFSEGLAQFRDLLEVGKSLVINVQAEERPE 1076