Pairwise Alignments

Query, 524 a.a., bacterial type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 441 a.a., pilus assembly protein PilQ from Pseudomonas simiae WCS417

 Score =  194 bits (493), Expect = 6e-54
 Identities = 123/431 (28%), Positives = 214/431 (49%), Gaps = 28/431 (6%)

Query: 85  VTLKLHNVDVGVALRSLAAAANTSIIVSPGVKGTASINVNRVPWEDVFKGILASNALDFA 144
           ++L   ++++  AL+ +A  A  +++ S  V+G+ ++ +  V W+     +L +  LD  
Sbjct: 30  LSLNFQSIELRTALQQIADVAGLNLVASDDVQGSITLRLKDVSWDQALDLVLQAKGLDKR 89

Query: 145 WRGELIQVMTLADKKAEVERELLETQRMAQQLKGRKVGPLVTSVIEVRYAEAAELKKNLE 204
            +  ++ V    +  A   RELL  +   Q  +   + PL   +++V YA+AA+L K  +
Sbjct: 90  VKAGVLLVAPAEELAA---RELLTLESRKQMAE---LAPLRRELLQVNYAKAADLAKLFQ 143

Query: 205 GFLSKDEQNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVEAT 264
                +      G+V VD  TN++I     + L ++  +V  LD P  Q++++A IVEA 
Sbjct: 144 SVTGLEGVTDERGSVAVDDRTNNIIAYQTVERLEELRRIVAQLDIPVRQVMIEARIVEAN 203

Query: 265 RDTARDLGIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQGF 324
            D  + LG +WGG    GN G G      P G+ P +   P      P +  G L+G   
Sbjct: 204 VDYDKSLGARWGGRLNRGNWGAGGIAKPPPEGAAPPENPPPS-----PFVDLGSLTGTS- 257

Query: 325 GMNFPVNKAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMAFT 384
                           LG+ + T    +L+++L+A++  G   I+S P + T D + A  
Sbjct: 258 ---------------GLGIAYIT-DNLLLDLELTAMEKTGNGEIVSQPKVVTSDKETARI 301

Query: 385 ENGEKVPYVSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTVEGN 444
             G ++PY  +++ G   V F++A L LE+TP +  +  + ++V+V KDE D    +   
Sbjct: 302 LKGTEIPYQESSSSGATSVSFKEASLSLEVTPQITPDDRVIMEVKVTKDEPDYLNKLNDV 361

Query: 445 PFIIKKQTETTLIVQDGETVVISGLTKERSSTRRQGLPYLQDVEGIGALFGNDSKANKLE 504
           P I K +    ++V+DGET+VI G+     S     +P+L DV  +G LF  D  A K  
Sbjct: 362 PPIKKNEVNAKVLVKDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVLAEKKS 421

Query: 505 DVLIFITPAIL 515
           ++L+F+TP I+
Sbjct: 422 ELLVFLTPRIM 432