Pairwise Alignments

Query, 524 a.a., bacterial type II/III secretion system protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 734 a.a., General secretion pathway protein D from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  119 bits (299), Expect = 3e-31
 Identities = 90/320 (28%), Positives = 157/320 (49%), Gaps = 39/320 (12%)

Query: 217 GAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVEATRDTARDLGIQW- 275
           G +  D  TNSLI+ A E    ++  +++ LD  RAQ+ +++ I E   + A + GIQW 
Sbjct: 367 GQIQADPATNSLIITAPEPQYRQLRAVIDQLDSRRAQVYVESLIAEVNAEKAAEFGIQWQ 426

Query: 276 GGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQGFGMNFPVNKAGK 335
           G +G SG+   G  +  T  G+G     +   G   P            GMN        
Sbjct: 427 GALGSSGDRVIG--LLGTNFGTGGRNILELAQGNATP----------SPGMN-------- 466

Query: 336 TAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMAFTENGEKVPYVS- 394
                LGL   T G  +L      LQ+NG+ N+LS+P++ TLDN+ A    G+ VP+V+ 
Sbjct: 467 -----LGLARRTNGVYVLGFLARFLQENGEGNVLSTPNLLTLDNEEAKIVIGQNVPFVTG 521

Query: 395 ----TNAQGD-------REVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTVEG 443
               T + G+       + ++ +D  L L + P + +   +K+ +  +   V  +     
Sbjct: 522 QFTNTGSGGNNGSVNPFQTIERKDVGLTLRVKPQISENGTIKMTIYQEVSNVVPSSVNST 581

Query: 444 NPFIIKKQT-ETTLIVQDGETVVISGLTKERSSTRRQGLPYLQDVEGIGALFGNDSKANK 502
              I  K+T E+T++V+DG  VV+ GL ++  +  ++ +P L DV   G LF +++++ K
Sbjct: 582 TGLITNKRTIESTVLVEDGAVVVLGGLLQDEYAGNQEKVPGLGDVPIFGNLFRSETRSRK 641

Query: 503 LEDVLIFITPAILPYREETS 522
             ++++F+ P ++    ETS
Sbjct: 642 KTNLMVFLRPVVMRDGRETS 661



 Score = 40.0 bits (92), Expect = 3e-07
 Identities = 41/187 (21%), Positives = 77/187 (41%), Gaps = 18/187 (9%)

Query: 84  PVTLKLHNVDVGVALRSLAAAANTSIIVSPGVKGTASINVNR----VPWEDVFKGILASN 139
           PVTL     ++    R++A     +++V P VKGT ++   R        + F  +L   
Sbjct: 47  PVTLNFVAAEIEAVARTMATITGRNVVVDPRVKGTVNLVTERPVTPTAALNQFAAVLRLQ 106

Query: 140 ALDFAWRGELIQVMTLADKKAEVERELLETQRMAQQLKGRKVGPLVTSVIEVRYAEAAEL 199
                  G L +++  AD  A+++  ++    ++       V   VT +  + +  A  L
Sbjct: 107 GFSLVDTGGLYKIVPEAD--AKLQGNVVSAGSVSALPASNTV---VTQIFRLNHESANNL 161

Query: 200 KKNLEGFLSKDEQNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRA---QILL 256
              L   +       P   + V+   NSL++    D+L +I  ++ +LD   A   +I+ 
Sbjct: 162 VPVLRPLIG------PNNTINVNPGNNSLVITDYADNLQRIGRIIASLDVAGATDVEIIP 215

Query: 257 KAHIVEA 263
             H V A
Sbjct: 216 LQHAVAA 222