Pairwise Alignments

Query, 457 a.a., tRNA modification GTPase TrmE (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 454 a.a., tRNA U34 5-methylaminomethyl-2-thiouridine modification GTPase from Escherichia coli BL21

 Score =  251 bits (642), Expect = 3e-71
 Identities = 170/464 (36%), Positives = 253/464 (54%), Gaps = 17/464 (3%)

Query: 1   MQHDDTIAAIATPLGQGGIGIIRISGPASLEVLRALF-RPSSSRFGGFRPWTLHHGTITD 59
           M  +DTI A ATP G+GG+GI+RISG  + EV   +  +    R+  + P+    G++  
Sbjct: 1   MSDNDTIVAQATPPGRGGVGILRISGFKAREVAETVLGKLPKPRYADYLPFKDADGSV-- 58

Query: 60  GCDPLDDVLAVHMPGPRTFTGEDVSEIHCHGGSGVLAAVLEACVR-HGARYAERGEFTRR 118
               LD  +A+  PGP +FTGEDV E+  HGG  +L  +L+  +   G R A  GEF+ R
Sbjct: 59  ----LDQGIALWFPGPNSFTGEDVLELQGHGGPVILDLLLKRILTIPGLRIARPGEFSER 114

Query: 119 AFLNGRMDLTQAEAVAEMIAAPSREGMRLAQAKLDGLLGQRVGALRARLDALRMQLCVAV 178
           AFLN ++DL QAEA+A++I A S +  R A   L G    RV  L   L  LR+ +  A+
Sbjct: 115 AFLNDKLDLAQAEAIADLIDASSEQAARSALNSLQGAFSARVNHLVEALTHLRIYVEAAI 174

Query: 179 DFPEEEVECLAPEAFLAEIEAVRQGVVELSAGYARTRCWQDGALVVLAGQVNAGKSSLMN 238
           DFP+EE++ L+     A++  V   +  + A   +    ++G  VV+AG+ NAGKSSL+N
Sbjct: 175 DFPDEEIDFLSDGKIEAQLNDVIADLDAVRAEARQGSLLREGMKVVIAGRPNAGKSSLLN 234

Query: 239 ALLGRRRAIVTDLPGTTRDFIEEPLNLSGLAIRLADTAGLRETGDIVEQEGVRMSRDLVA 298
           AL GR  AIVTD+ GTTRD + E +++ G+ + + DTAGLRE  D VE+ G+  +   + 
Sbjct: 235 ALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIGIERAWQEIE 294

Query: 299 QADLVLLVTD--ATQGLQGPEL---ELLRHAGPERVLVVFNKTDLLEGRILPSTPEGCRS 353
           QAD VL + D   T  +   E+    + R      + VV NK D+    +  S   G   
Sbjct: 295 QADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLGMSEVNGHAL 354

Query: 354 VHVAAASGDGVESLVTAIRAAVLAATGAGEPEAGELAPNMRQAAALDKAATILDELAGDI 413
           + ++A +G+GVE L   ++ ++   T     E G LA   R   AL++AA  L +    +
Sbjct: 355 IRLSARTGEGVEVLRNHLKQSMGFDTNM---EGGFLA-RRRHLQALEQAAEHLQQGKAQL 410

Query: 414 RAHVPYDLCGVRLDGACAALMDVTGQSTPEAILDAIFASFCIGK 457
                 +L    L  A   L ++TG+ T + +L  IF+SFCIGK
Sbjct: 411 LGAWAGELLAEELRLAQQNLSEITGEFTSDDLLGRIFSSFCIGK 454