Pairwise Alignments

Query, 534 a.a., inner membrane protein, 60 kDa (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 543 a.a., membrane protein insertase YidC from Dickeya dadantii 3937

 Score =  253 bits (646), Expect = 1e-71
 Identities = 123/308 (39%), Positives = 188/308 (61%), Gaps = 11/308 (3%)

Query: 228 KSSTGDLEKGVLIDGSIDWAGVMSNYFLAAVAPK--DTRAVLKGKLEGGVYRVAVERPDQ 285
           K S  D+++ + I     W  ++  YF  A  P            L  G+  +  + P  
Sbjct: 231 KYSFSDMKENLNITTQGGWVAMLQQYFATAWVPAAAGNNTFYSANLGNGLAAIGFKAPPV 290

Query: 286 MVNPGNSDVIVCNYWFGPKERDLLNAAPNNLGKAIDLGWFGFIARPLVTLLDFFYKYVGN 345
           +V PG+   +    W GP+ +D +     +L   +D GW  FI++PL  LL F + ++GN
Sbjct: 291 IVQPGSQQNLNATLWVGPEIQDKMATVAPHLDLTVDYGWLWFISQPLFKLLKFLHGFIGN 350

Query: 346 YGTAIILLTILIKLVFWPLSHKSYKSMEQMKKLQPMLAKVREKHADDREKMNEEMMRLYK 405
           +G +II +T +++ + +PL+   Y SM +M+ LQP L  +RE+  DD+++M++EMM LYK
Sbjct: 351 WGFSIIAITFIVRGIMYPLTKAQYTSMAKMRMLQPKLQAMRERIGDDKQRMSQEMMALYK 410

Query: 406 TYKVNPAGGCLPMLVQIPVFFGLYQALLNAIELRHAPFIAHVPFTDIVWLADLSAKDPFY 465
             KVNP GGC P+L+Q+P+F  LY  L+ ++ELRHAPF         +W+ DLSA+DP+Y
Sbjct: 411 AEKVNPLGGCFPLLIQMPIFLALYYMLMGSVELRHAPF--------ALWIHDLSAQDPYY 462

Query: 466 VTPLVMGATMFLQQKLTP-PAGDPTQAKVMMFMPVVFTFLFLNFPSGLVVYWLCNNVLSI 524
           V P++MG TMF  QK++P    DP Q K+M +MPV+FT  FL FPSGLV+Y++ +N+++I
Sbjct: 463 VLPILMGLTMFFIQKMSPTTVTDPMQQKIMTYMPVIFTVFFLWFPSGLVLYYIVSNLVTI 522

Query: 525 AQQWWILR 532
           AQQ  I R
Sbjct: 523 AQQQLIYR 530