Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 332 a.a., LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) from Variovorax sp. SCN45

 Score =  197 bits (501), Expect = 5e-55
 Identities = 129/310 (41%), Positives = 173/310 (55%), Gaps = 27/310 (8%)

Query: 19  VPAGMRNERLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQ--RVE 76
           + +    +RLDR L   +   + SR  +++ I  G   + G   T  S  +++GQ  R+E
Sbjct: 30  IDSAQHGQRLDRALAALVP--EFSRSYLQQLIEAGAVELQGRTVTKVSAGVKAGQAGRIE 87

Query: 77  LAIAPAATAVEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHFDALR 136
           L   P + A  PE  DL  ++ DEHL ++DKPAGL VHP P    GTL++ L+    AL 
Sbjct: 88  LRPTPQSQAFRPETMDLVTVYEDEHLRIVDKPAGLVVHPAPGHWSGTLLNGLL----ALD 143

Query: 137 AQEGFRP--GIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVH--GVPPA 192
            +    P  GIVHR+D+DTSGL++VA +      +    A R V+++YLA+ H   V  A
Sbjct: 144 PKAALLPRAGIVHRLDRDTSGLMVVARTRATMDAMVALIAAREVKRQYLAIGHKPWVGAA 203

Query: 193 TGEVDAPIGRHPTHKVRMAVV----KGGKPARSEWRVLHAAPEGHYALVAVRIHSGRTHQ 248
             +VDAPIGR P +++RMAVV      GK AR+    L +  EG   +V   + +GRTHQ
Sbjct: 204 ARQVDAPIGRDPRNRLRMAVVDLERHAGKTARTLIERLDSHSEG--CVVRCTLETGRTHQ 261

Query: 249 IRVHMAHAGFPLWGDQLYGPGTPARLREQGYGARQMLHAWHLAFTHPVTGERLRFTCPPP 308
           IRVHMA  G PL GD LYG      L      +RQ LHA+ LAF HPVT E + F  PPP
Sbjct: 262 IRVHMASIGHPLVGDALYGGAPAVGL------SRQALHAFRLAFVHPVTQEPMEFRSPPP 315

Query: 309 QDFPDLAIAL 318
              PDL  AL
Sbjct: 316 ---PDLIQAL 322