Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 344 a.a., RNA pseudouridine synthase from Pontibacter actiniarum KMM 6156, DSM 19842

 Score =  165 bits (417), Expect = 3e-45
 Identities = 119/316 (37%), Positives = 167/316 (52%), Gaps = 24/316 (7%)

Query: 15  HSLTVPAGMRNERLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGT-VCTTPSTRLRSGQ 73
           H + V  G    RLD+FL + L +  ++R K++ AIR     V+   V  +   +     
Sbjct: 20  HRIVVDKGQALLRLDKFLMDRLPN--VTRNKLQGAIRSEAVQVNQKPVKVSYKVKPLDVI 77

Query: 74  RVELAIAPAATAVEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHFD 133
            V LA AP  T + PE   L II+ D+ LL+++K AG+ VHP  +   GTLV+ L +H  
Sbjct: 78  TVTLAEAPRDTDIVPENIPLDIIYEDDELLLVNKAAGMVVHPAYNNWNGTLVNALTYHLQ 137

Query: 134 AL---RAQEGFRPGIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVP 190
            L   R  EG RPG+VHRIDKDTSGLL++A ++     L++ F + ++E+ Y ALV GVP
Sbjct: 138 NLPTHRNGEG-RPGLVHRIDKDTSGLLVIAKTDYSMAYLAKQFFDHSIERTYYALVWGVP 196

Query: 191 -PATGEVDAPIGRHPTHKVRMAVVKG---GKPARSEWRVLHAAPEGHYALVAVRIHSGRT 246
               G +   +GR    +  MAV      GK A + ++VL +    + +LV   + +GRT
Sbjct: 197 KEQKGTITGHVGRSAKDRKVMAVYPAGDYGKHAVTHYKVLRSF--RYVSLVQCNLETGRT 254

Query: 247 HQIRVHMAHAGFPLWGDQLYG---------PGTPARLREQGYG--ARQMLHAWHLAFTHP 295
           HQIR HM H G PL+ D  YG          GT     E  +    RQ LHA  L F HP
Sbjct: 255 HQIRAHMKHIGHPLFSDATYGGDKILYGMPNGTYKSFVENAFKLMPRQALHAKSLGFLHP 314

Query: 296 VTGERLRFTCPPPQDF 311
            T E ++F    P+DF
Sbjct: 315 DTKEFMQFNSDLPEDF 330