Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 327 a.a., RluA family pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  213 bits (542), Expect = 9e-60
 Identities = 138/313 (44%), Positives = 183/313 (58%), Gaps = 24/313 (7%)

Query: 17  LTVPAGMRNE---RLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQ 73
           LT PA    E   RLDR+L  AL   +LSR +IK  + DG+ +++ T  +  S R++ GQ
Sbjct: 9   LTPPAVEPEEAGTRLDRWL--ALRLPELSRTRIKGLMEDGRVSLEETTISDASLRVKPGQ 66

Query: 74  RVELAIAPAATAV-EPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHF 132
              + + P A A  EP++  LT+++ DE L+VIDKPAG+ VHP P  P+ TLV+ L+ H 
Sbjct: 67  CFVVDVPPDAPAQPEPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHC 126

Query: 133 DALRAQEGF--RPGIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVP 190
               A  G   RPGIVHRIDKDTSGLL+ A ++     L+  FA  T+E+ Y ALV G P
Sbjct: 127 GESLAGIGGVKRPGIVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTP 186

Query: 191 -PATGEVDAPIGRHPTHKVRMAVVK-GGKPARSEWRVLHAAPEGHYALVAVRIHSGRTHQ 248
            P  GE++  IGR+P  + +MAVVK GGKPA + +RVL +   G  +LV  R+ +GRTHQ
Sbjct: 187 SPRQGEIEGNIGRNPNDRKKMAVVKSGGKPALTRYRVLKSFAGGAVSLVECRLATGRTHQ 246

Query: 249 IRVHMAHAGFPLWGDQLYG-----------PGTPARLREQGYGARQMLHAWHLAFTHPVT 297
           IRVHM   G PL GD +YG           P     L +     RQ LHA+ L F+HP  
Sbjct: 247 IRVHMTTQGHPLVGDPVYGRIRGHKGVVLPPEVKTALIQ---FPRQALHAYLLGFSHPTK 303

Query: 298 GERLRFTCPPPQD 310
           G  +RF    P D
Sbjct: 304 GYDVRFESGMPLD 316