Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 325 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Serratia liquefaciens MT49

 Score =  187 bits (474), Expect = 7e-52
 Identities = 118/310 (38%), Positives = 170/310 (54%), Gaps = 16/310 (5%)

Query: 18  TVPAGMRNERLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQRVEL 77
           TV      +RLD+ L E     D SR +IK  I D +  V+G     P  ++  G+ V +
Sbjct: 10  TVAESQLGQRLDQALAELFP--DYSRSRIKDWILDDRVQVNGKTINKPKEKVLGGETVAI 67

Query: 78  -AIAPAATAVEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHFDALR 136
            A        EP++  L I++ D  +LVI+KP  L VHP    P+GT+++ L+H++  + 
Sbjct: 68  DAQIEEEARWEPQDIALNIVYEDSDILVINKPRDLVVHPGAGNPDGTVLNALLHYYPEIA 127

Query: 137 AQEGFRPGIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVPPATGEV 196
                R GIVHR+DKDT+GL++VA +   + +L EA   R + +EY A+  G   A G V
Sbjct: 128 DVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVEALQAREITREYEAVAIGTMTAGGTV 185

Query: 197 DAPIGRHPTHKVRMAVVKGGKPARSEWRVLHAAPEGHYALVAVRIHSGRTHQIRVHMAHA 256
           + PI RH T +  MAV   GKPA + +R++       +  + +R+ +GRTHQIRVHM+H 
Sbjct: 186 EEPISRHSTKRTHMAVHPMGKPAVTHYRIMEHFRA--HTRLRLRLETGRTHQIRVHMSHI 243

Query: 257 GFPLWGDQLYG--PGTPARLRE------QGYGARQMLHAWHLAFTHPVTGERLRFTCPPP 308
             PL GDQLYG  P  P    E      +G+  RQ LHA  L   HP++G ++ +  P P
Sbjct: 244 NHPLVGDQLYGGRPRPPKGASEAFIATLRGFD-RQALHATMLRLYHPISGIQMEWHAPLP 302

Query: 309 QDFPDLAIAL 318
           QD  DL  AL
Sbjct: 303 QDMVDLINAL 312