Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 324 a.a., Pseudouridylate synthases, 23S RNA-specific from Kangiella aquimarina DSM 16071

 Score =  186 bits (473), Expect = 9e-52
 Identities = 119/297 (40%), Positives = 165/297 (55%), Gaps = 14/297 (4%)

Query: 26  ERLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQRVEL-AIAPAAT 84
           +RLD  L +  S  D SR +I+  I++G   V+G V T+   ++   + +E+ A    A 
Sbjct: 19  KRLDAALSQQFS--DYSRSRIQEWIQNGFVKVNGEVITSNKYKMAGFEDIEINAEIEVAG 76

Query: 85  AVEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHFDALRAQEGFRPG 144
             +PE  DL I++ D+ LLVI+KPAGL VHP     +GT+V+ L+HH   L      R G
Sbjct: 77  EWKPEAIDLDIVYEDDALLVINKPAGLVVHPGAGNQDGTMVNALLHHCPELANLP--RAG 134

Query: 145 IVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVPPATGEVDAPIGRHP 204
           I+HRIDK+T+GLL+VA +      L E    R   +EY A+V+ V  + G +D PIGRHP
Sbjct: 135 IIHRIDKETTGLLVVAKTIAAHTNLVEQLQNRAFTREYDAVVNRVMVSGGTIDKPIGRHP 194

Query: 205 THKVRMAVVKGGKPARSEWRVLHAAPEGHYALVAVRIHSGRTHQIRVHMAHAGFPLWGDQ 264
           T +  MAVV  GK A + +RV+    +  +  + +R+ +GRTHQIRVHMA+  FPL GD 
Sbjct: 195 TKRTSMAVVPDGKRAITHYRVVEKFLD--HTHLKLRLETGRTHQIRVHMAYLKFPLVGDP 252

Query: 265 LYGPG-------TPARLREQGYGARQMLHAWHLAFTHPVTGERLRFTCPPPQDFPDL 314
           LY          TP          RQ LHA  L   HP +GE + +  P PQD   L
Sbjct: 253 LYSGRYRVPTRITPILRETLDSFKRQALHASLLGLNHPESGEYIEWRAPLPQDMSSL 309