Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 339 a.a., RluA family pseudouridine synthase from Brevundimonas sp. GW460-12-10-14-LB2

 Score =  199 bits (505), Expect = 2e-55
 Identities = 128/309 (41%), Positives = 174/309 (56%), Gaps = 19/309 (6%)

Query: 27  RLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQRVELAIAPAATAV 86
           RLD+ L  A     LSR +++  + +G  + DG V T  S + + G    +A+ P A A 
Sbjct: 32  RLDKALAGAFP--TLSRARLQALLAEGAVSRDGAVLTGGSAKAQPGLYA-VALPPVAPAT 88

Query: 87  -EPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHF-DALRAQEGF-RP 143
            +P+   LT+++ D  L+VIDKPAG+  HP P  P+GTLV+ L+ H  D+L    G  RP
Sbjct: 89  PQPQAIPLTVLYEDADLIVIDKPAGMAAHPAPGTPDGTLVNALLAHCGDSLSGIGGVARP 148

Query: 144 GIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVP-PATGEVDAPIGR 202
           GIVHR+DKDTSG+++ A ++     LS  FA   +E+ Y+AL  G P PATG +   IGR
Sbjct: 149 GIVHRLDKDTSGVMVAAKTDRAHAGLSALFAAHDIERTYIALTRGAPSPATGRIHTRIGR 208

Query: 203 HPTHKVRMAVVK-GGKPARSEWRV-------LHAAPEGHYALVAVRIHSGRTHQIRVHMA 254
               + +MAV+K GG+ A +++ V         A      A VA  +H+GRTHQIRVH++
Sbjct: 209 STGDRKKMAVLKAGGREAITDYVVQATFGQPAKAGGAPMAARVACTLHTGRTHQIRVHLS 268

Query: 255 HAGFPLWGDQLYGPGTPA----RLREQGYGARQMLHAWHLAFTHPVTGERLRFTCPPPQD 310
             G P+ GD  YG G+PA        +    RQ LHA  L F HPVTGE LRF   PP D
Sbjct: 269 SKGAPILGDATYGSGSPAIPVRTAIAEAALERQALHAAVLGFVHPVTGEVLRFETAPPYD 328

Query: 311 FPDLAIALA 319
              L   LA
Sbjct: 329 MQRLETRLA 337