Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 326 a.a., 23S rRNA pseudouridine(1911,1915,1917) synthase from Escherichia coli BL21

 Score =  191 bits (484), Expect = 5e-53
 Identities = 116/308 (37%), Positives = 170/308 (55%), Gaps = 20/308 (6%)

Query: 18  TVPAGMRNERLDRFLGEALSHTDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQRVEL 77
           TV      +RLD+ L E     D SR +IK  I D +  V+G VC  P  ++  G++V +
Sbjct: 10  TVSENQLGQRLDQALAEMFP--DYSRSRIKEWILDQRVLVNGKVCDKPKEKVLGGEQVAI 67

Query: 78  -AIAPAATAVEPEEGDLTIIHRDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHFDALR 136
            A        EP++  L I++ DE +++I+KP  L VHP    P+GT+++ L+H++  + 
Sbjct: 68  NAEIEEEARFEPQDIPLDIVYEDEDIIIINKPRDLVVHPGAGNPDGTVLNALLHYYPPIA 127

Query: 137 AQEGFRPGIVHRIDKDTSGLLLVALSEGVRLKLSEAFAERTVEKEYLALVHGVPPATGEV 196
                R GIVHR+DKDT+GL++VA +   + +L E+   R + +EY A+  G   A G V
Sbjct: 128 DVP--RAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQRREITREYEAVAIGHMTAGGTV 185

Query: 197 DAPIGRHPTHKVRMAVVKGGKPARSEWRVLHAAPEGHYAL---VAVRIHSGRTHQIRVHM 253
           D PI RHPT +  MAV   GKPA + +R++      H+ +   + +R+ +GRTHQIRVHM
Sbjct: 186 DEPISRHPTKRTHMAVHPMGKPAVTHYRIME-----HFRVHTRLRLRLETGRTHQIRVHM 240

Query: 254 AHAGFPLWGDQLYG--PGTPARLREQGYGA-----RQMLHAWHLAFTHPVTGERLRFTCP 306
           AH   PL GD +YG  P  P    E          RQ LHA  L   HP++G  + +  P
Sbjct: 241 AHITHPLVGDPVYGGRPRPPKGASEAFISTLRKFDRQALHATMLRLYHPISGIEMEWHAP 300

Query: 307 PPQDFPDL 314
            PQD  +L
Sbjct: 301 IPQDMVEL 308