Pairwise Alignments

Query, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

Subject, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

 Score =  168 bits (425), Expect = 3e-46
 Identities = 117/305 (38%), Positives = 167/305 (54%), Gaps = 26/305 (8%)

Query: 39  TDLSREKIKRAIRDGQCTVDGTVCTTPSTRLRSGQRVELAIA-PAATAVEPEEGDLTIIH 97
           +DLSR ++K  I  G   ++G   T P  ++  G RVE+ +  P     + E+  L + +
Sbjct: 35  SDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVMPEPEDPVPQGEDIPLDVEY 94

Query: 98  RDEHLLVIDKPAGLTVHPCPSCPEGTLVHRLVHHF-DALRAQEGF-RPGIVHRIDKDTSG 155
            DE L+V+ KPAGL VHP      GTLV+ L++H  D+L    G  RPGIVHR+DK+TSG
Sbjct: 95  EDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSGIGGVKRPGIVHRLDKETSG 154

Query: 156 LLLVALSEGVRLKLSEAFAER----TVEKEYLALVHGVPPAT-GEVDAPIGRHPTHKVRM 210
           +++VA ++     L+  FA+      +E+ Y A+V G P    G VDA +GR  T + + 
Sbjct: 155 VMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRTLRGTVDAALGRG-TDRTKR 213

Query: 211 AVVK----GGKPARSEWRVL---HAAPEGHY--ALVAVRIHSGRTHQIRVHMAHAGFPLW 261
           AV        + A + + V+   H  P+     ++V  R+ +GRTHQIRVHMAH G PL 
Sbjct: 214 AVKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLETGRTHQIRVHMAHIGHPLI 273

Query: 262 GDQLYGPG--TPARLREQGYGA------RQMLHAWHLAFTHPVTGERLRFTCPPPQDFPD 313
           GD  YG    T A L ++   +      RQ LHA+ LAF HP TGE + F    P+D  +
Sbjct: 274 GDPEYGAAFRTKANLLDEPARSTVNRFPRQALHAYLLAFEHPRTGEVMEFETDMPEDMEE 333

Query: 314 LAIAL 318
           L  AL
Sbjct: 334 LVTAL 338